Input parameters:

  Query = ENSMUSP00000104802 (Len=1029)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000104802, Len=1029):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 ITGVWCCEWLRCCGGGEPRPRTVWLGHPEKRDQRYPRNVINNQKYNFFTFLPGVLFSQFRYFFNFYFLLLACSQFVPEMR 80  
WD40-rpts                                                                                      

Query       81 LGALYTYWVPLGFVLAVTIIREAVEEIRCYVRDKEMNSQVYSRLTSRGTVKVKSSNIQVGDLILVEKNQRVPADMIFLRT 160 
WD40-rpts                                                                                      

Query      161 SEKNGSCFLRTDQLDGETDWKLRLPVACTQRLPTAADLLQIRSYVYAEEPNIDIHNFLGTFTREDSDPPISESLSIENTL 240 
WD40-rpts                                                                                      

Query      241 WAGTVIASGTVVGVVLYTGRELRSVMNTSDPRSKIGLFDLEVNCLTKILFGALVVVSLVMVALQHFAGRWYLQIIRFLLL 320 
WD40-rpts                                                                                      

Query      321 FSNIIPISLRVNLDMGKIVYSWVIRRDSKIPGTVVRSSTIPEQLGRISYLLTDKTGTLTQNEMVFKRLHLGTVAYGLDSM 400 
WD40-rpts                                                                                      

Query      401 DEVQSHIFSIYTQQSQDPPAQKGPTVTTKVRRTMSSRVHEAVKAIALCHNVTPVYESNGVTDQAEAEKQFEDSCRVYQAS 480 
WD40-rpts                                                                                      

Query      481 SPDEVALVQWTESVGLTLVGRDQSSMQLRTPGDQVLNLTILQVFPFTYESKRMGIIVRDESTGEITFYMKGADVVMAGIV 560 
WD40-rpts                                                                                      

Query      561 QYNDWLEEECGNMAREGLRVLVVAKKSLTEEQYQDFEARYVQAKLSVHDRSLKVATVIESLEMEMELLCLTGVEDQLQAD 640 
WD40-rpts                     (______________________________________WD 1______________________

Query      641 VRPTLETLRNAGIKVWMLTGDKLETATCTAKNAHLVTRNQDIHVFRLVTNRGEAHLELNAFRRKHDCALVISGDSLEVCL 720 
WD40-rpts      ________________)                                              (________________

Query      721 KYYEYEFMELACQCPAVVCCRCAPTQKAQIVRLLQERTGKLTCAVGDGGNDVSMIQESDCGVGVEGKEGKQASLAADFSI 800 
WD40-rpts      _________________WD 2________________________________)                          

Query      801 TQFKHLGRLLMVHGRNSYKRSAALSQFVIHRSLCISTMQAVFSSVFYFASVPLYQGFLIIGYSTIYTMFPVFSLVLDKDV 880 
WD40-rpts                                                                                      

Query      881 KSEVAMLYPELYKDLLKGRPLSYKTFLIWVLISIYQGSTIMYGALLLFESEFVHIVAISFTSLILTELLMVALTIQTWHW 960 
WD40-rpts                                                                                      

Query      961 LMTVAELLSLACYIASLVFLHEFIDVYFIATLSFLWKVSVITLVSCLPLYVLKYLRRRFSPPSYSKLTS 1029
WD40-rpts                                                                           

2 WD40-repeats found in QUERY=ENSMUSP00000104802 (Len=1029):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 21   576-657      3.03  239.84  0.03588       35.0%     10.16
  WD 2:  Seg 25   704-774      3.71  267.79  0.01523       22.5%     33.31

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  576-657    EG--LRVLVVA-------------------KKSLTEEQYQDFEARYVQAKLSVHDRSLKVATVIESLEMEM------------ELLCLTGVEDQLQADVRPTLETLRNAGIKVWM
   WD 2  704-774    KHDCALVISGDSLEVCLKYYEYEFMELACQCPAVV----------------CCRC-------------APTQKAQIVRLLQERTGKLTCAVGD----G-----------GNDVSM

   WD40 Template    TGECLRTLSGH-------------------TSGVT----------------SVSF-------------SPD------------GKRLVSGSED----G-----------TIKVWD