Input parameters:

  Query = ENSMUSP00000104729 (Len=324)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000104729, Len=324):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 CNADEEAGEQAGEEAGEYAGEHAGSALTNGGLNLHSPVKRKLETEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTH 80  
WD40-rpts                                                                                 (____

Query       81 ILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKAF 160 
WD40-rpts      ________________________WD 1___________________________)                        

Query      161 IQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEA 240 
WD40-rpts                                                                                      

Query      241 CSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEEVNEKECVMLKQLWSSSKGLDSLFSYLQDK 320 
WD40-rpts                                                                                      

Query      321 IYEV 324 
WD40-rpts          

1 WD40-repeats found in QUERY=ENSMUSP00000104729 (Len=324):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    76-136      2.77  229.00  0.04987       20.0%     12.66

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   76-136    EGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIG

   WD40 Template    TGECLRTLSGHTSGVTSVS---------------FSPDGKRLVSGSEDGTIKVWD------