Input parameters:

  Query = ENSMUSP00000104359 (Len=1036)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000104359, Len=1036):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMKFRFRRQGADPQREKLKQELFAFHKTVEHGFPNQPSALAFDPELRIMAIGTRSGAVKIYGAPGVEFTGLHRDAATVTQ 80  
WD40-rpts                          (__________________WD 1__________________)  (_______________

Query       81 MHFLPGQGRLLTLLDDSSLHLWEIIHHNGCAHLEEGLSFHPPSRPSFDNASFPASLTRVTVVLLVAGNTAALGTESGSIF 160 
WD40-rpts      __WD 2________________)                                         (_______________

Query      161 FLDVATLALLEGQTLSPDVVLRSVPDDYRCGKALGPVESLQGHLQDPSKILIGYSRGLLVIWSQATQSVDNVFLGNQQLE 240 
WD40-rpts      __WD 3________________)(_________________WD 4_________________)(________________

Query      241 SLCWGRDGSSIISSHSDGSYAIWSTDTGSPPTLQPTVVTTPYGPFPCKAINKILWRSCESGDHFIIFSGGMPRASYGDRH 320 
WD40-rpts      __WD 5_________________)                                                        

Query      321 CVSVLRAETLVTLDFTSRVIDFFTVHSTQPEDECDNPQALAVLLEEELVVLDLQTPGWPAVPAPYLAPLHSSAITCSAHV 400 
WD40-rpts                                                                                      

Query      401 ANVPSKLWARIVSAGEQQSPQPASSALSWPITGGRNLAQEPSQRGLLLTGHEDGTVRFWDASGVALRPLYKLSTAGLFQT 480 
WD40-rpts                     (____________________WD 6___________________)                    

Query      481 DCEHADSLAQAVEDDWPPFRKVGCFDPYSDDPRLGIQKVALCKYTAQMVVAGTAGQVLVLELSEVPAEHAVSVANVDLLQ 560 
WD40-rpts                                                                                      

Query      561 DREGFTWKGHERLNPHTGLLPWPAGFQPRMLIQCLPPAAVTAVTLHAEWSLVAFGTSHGFGLFDYQRKSPVLARCTLHPN 640 
WD40-rpts                                                                                      

Query      641 DSLAMEGPLSRVKSLKKSLRQSFRRIRKSRVSGKKRTPAASSKLQEANAQLAEQTCPHDLEMTPVQRRIEPRSADDSLSG 720 
WD40-rpts                                                                                      

Query      721 VVRCLYFADTFLRDATHHGPTMWAGTNSGSVFAYALEVPAATAGGEKRPEQAVEAVLGKEVQLMHRAPVVAIAVLDGRGR 800 
WD40-rpts                                                                                      

Query      801 PLPEPYEASRDLAQAPDMQGGHAVLIASEEQFKVFTLPKVSAKTKFKLTAHEGCRVRKVALATFASVMSEDYAETCLACL 880 
WD40-rpts                                                                                      

Query      881 TNLGDVHVFSVPGLRPQVHYSCIRKEDISGIASCVFTRHGQGFYLISPSEFERFSLSARNITEPLCSLDISWPQNATQPR 960 
WD40-rpts                                                                                      

Query      961 LQESPKLSQANGTRDIILAPESCEGSPSSAHSKRADTMEPPEAALSPVSIDSAASGDTMLDTTGDVTVEYVKDFLG 1036
WD40-rpts                                                                                  

6 WD40-repeats found in QUERY=ENSMUSP00000104359 (Len=1036):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    21-62       5.41  338.29  0.00172       15.0%     48.89
  WD 2:  Seg  6    65-103      6.38  378.35  0.00050       25.0%     58.91
  WD 3:  Seg 13   145-183      2.83  231.38  0.04641       10.0%     28.26
  WD 4:  Seg 17   184-223      4.29  291.68  0.00728       17.5%     43.61
  WD 5:  Seg 20   224-264      5.45  339.68  0.00164       17.5%     55.42
  WD 6:  Seg 32   416-460      6.34  376.54  0.00052       27.5%     18.05

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-62     EL-FAFHKTVEHGF-----PNQPSALAFDP-ELRIMAIGTRSGAVKIYG
   WD 2   65-103    -G-VEFT--GLHRD-----AATVTQMHFLP-GQGRLLTLLDDSSLHLWE
   WD 3  145-183    -V-AGNT--AALGT-----ESGSIFFLDVA-TLALLEGQTLSPDVVLRS
   WD 4  184-223    VP-DDYR---CGKA-----LGPVESLQGHLQDPSKILIGYSRGLLVIWS
   WD 5  224-264    QATQSVD--NVFLG-----NQQLESLCWGR-DGSSIISSHSDGSYAIWS
   WD 6  416-460    EQ-QSPQ--PASSALSWPITGGRNLAQEPS-QRGLLLTGHEDGTVRFWD

   WD40 Template    TG-ECLR--TLSGH-----TSGVTSVSFSP-DGKRLVSGSEDGTIKVWD