Input parameters:

  Query = ENSMUSP00000104135 (Len=753)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000104135, Len=753):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMEERAAAAVASAASSCRPLGSGTAPNPTAAAPASSPAPGPGPVGKGGGGGGSPGPTAGPEPLSLPGILHFIQHEWARFE 80  
WD40-rpts                                                                                      

Query       81 AEKARWEAERAELQAQVAFLQGERKGQENLKTDLVRRIKMLEYALKQERAKYHKLKFGTDLNQGEKKTDLSEQVSNGPVE 160 
WD40-rpts                                                                                      

Query      161 SVTLENSPLVWKEGRQLLRQYLEEVGYTDTILDMRSKRVRSLLGRSLELNGAGEPVEGAPRASPGPGGLSGGESLLVKQI 240 
WD40-rpts                                                                                      

Query      241 EEQIKRNAAGKDGKERLGGSVLEQIPFLQNCEDEDSDEDDELDSVQHKKQRVRLPSKALVPEMEDEDEEDDSEDAINEFD 320 
WD40-rpts                                                                                   (__

Query      321 FLGSGEDGEGSPDPRRCTSEGNPHELESRRVKLQGILADLRDVDGLPPKVTVPPPGTPQPRPHEDVFIMDTIGGGEVSLG 400 
WD40-rpts      ____________WD 1_____________)   (________________WD 2_______________)(_________

Query      401 DLADLTVTNDNDLSCDLSDSKDAFKKTWNPKFTLRSHYDGIRSLAFHHSQSALLTASEDGTLKLWNLQKAVTAKKNAALD 480 
WD40-rpts      ________WD 3________________)________________WD 4________________)              

Query      481 VEPIHAFRAHRGPVLAVTMGSNSEYCYSGGADARIHSWKIPDLNMDPYDGYDPSVLSHVLEGHGDAVWGLAFSPTSQRLA 560 
WD40-rpts      (_________________WD 5________________)              (_________________WD 6_____

Query      561 SCSADGTVRIWDPSSSGPSCLCTFPMDGEHGIPTSVAFTSTEPAHVVASFRSGDTVLYDLEAGSALLTLESRGSSGPAQI 640 
WD40-rpts      ___________)(_____________________WD 7____________________)   (_________________

Query      641 NQVVSHPSQPLTITAHDDRGIRFLDNRTGKSVHSMVAHLDAVTCLAVDPNGVFLMSGSHDCSLRLWSLDNKTCVQEITAH 720 
WD40-rpts      __WD 8__________________)   (_________________WD 9________________)(____________

Query      721 RKKHEEAIHAVACHPSKALIASAGADALAKVFV 753 
WD40-rpts      ________WD10____________________)

10 WD40-repeats found in QUERY=ENSMUSP00000104135 (Len=753):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   318-350      4.44  298.23  0.00594       12.5%      7.02
  WD 2:  Seg  3   354-390      5.58  345.10  0.00139       20.0%     11.46
  WD 3:  Seg  5   391-429      6.62  388.18  0.00037       22.5%     33.92
  WD 4:  Seg  8   428-466      9.21  495.01  1.3e-05       35.0%     46.03
  WD 5:  Seg 12   481-519      7.86  439.14  7.5e-05       22.5%     51.76
  WD 6:  Seg 16   534-572      9.35  500.78  1.1e-05       40.0%     46.96
  WD 7:  Seg 20   573-619      6.36  377.39  0.00051       22.5%     47.52
  WD 8:  Seg 23   623-665      6.88  398.75  0.00026       25.0%     56.65
  WD 9:  Seg 27   669-707      9.85  521.38  5.8e-06       30.0%     54.81
  WD10:  Seg 31   708-753      6.56  385.54  0.00040       20.0%     46.37

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  318-350    EF------D-------------FLGS----GEDGEGSP-DPRRCTSEGNPHELESRR
   WD 2  354-390    -Q------G------ILADLRDVDGL----PPKVTVPP-PGTPQPRPHED--VFIMD
   WD 3  391-429    T-------I------GGGEVSLGDLA----DLTVTNDN-DLSCDLSDSKDAFKKTWN
   WD 4  428-466    -W------N------PKFTLRSHYDG----IRSLAFHH-SQSALLTASEDGTLKLWN
   WD 5  481-519    -V------E------PIHAFRAHRGP----VLAVTMGS-NSEYCYSGGADARIHSWK
   WD 6  534-572    -S------V------LSHVLEGHGDA----VWGLAFSP-TSQRLASCSADGTVRIWD
   WD 7  573-619    PS------SSGPSCLCTFPMDGEHGI----PTSVAFTSTEPAHVVASFRSGDTVLYD
   WD 8  623-665    -G------S------ALLTLESRGSSGPAQINQVVSHP-SQPLTITAHDDRGIRFLD
   WD 9  669-707    -G------K------SVHSMVAHLDA----VTCLAVDP-NGVFLMSGSHDCSLRLWS
   WD10  708-753    LDNKTCVQE------ITAHRKKHEEA----IHAVACHP-SKALIASAGADALAKVFV

   WD40 Template    TG------E------CLRTLSGHTSG----VTSVSFSP-DGKRLVSGSEDGTIKVWD