Input parameters:

  Query = ENSMUSP00000104119 (Len=640)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000104119, Len=640):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAGGAEGGPGPSAAMGDCAEIKSQFRTREGFYKLLPGDATRRSGPTSAQTPAPPQPTQPPPGPAAASGPGAAGPASSPP 80  
WD40-rpts                                                                     (________________

Query       81 PAGPGPGPALPAVRLSLVRLGDPDGAGEPPSTPSGLGAGGDRVCFNLGRELYFYPGCCRSGSQRSIDLNKPIDKRIYKGT 160 
WD40-rpts      _WD 1________________)___________________WD 2_____________________)   (_________

Query      161 QPTCHDFNQFTAATETISLLVGFSAGQVQYLDLIKKDTSKLFNEERLIDKTKVTYLKWLPESESLFLASHASGHLYLYNV 240 
WD40-rpts      _________WD 3__________________)                                     (__________

Query      241 SHPCTSTPPQYSLLKQGEGFAVYAAKSKAPRNPLAKWAVGEGPLNEFAFSPDGRHLACVSQDGCLRVFHFDSMLLRGLMK 320 
WD40-rpts      ______WD 4________________)   (_________________WD 5________________)   (_______

Query      321 SYFGGLLCVCWSPDGRYVVTGGEDDLVTVWSFTEGRVVARGHGHKSWVNAVAFDPYTTRAEEAASASADGDPSGEEEEPE 400 
WD40-rpts      __________WD 6________________)   (__________________WD 7__________________)(___

Query      401 VTSSDTGAPVSPLPKAGSITYRFGSAGQDTQFCLWDLTEDVLSPHPSLARTRTLPGTPGATPPASGSSRAGETGAGPLPR 480 
WD40-rpts      ______________WD 8_________________)                                       (____

Query      481 SLSRSNSLPHPAGGGKAGGPSASMEPGIPFSIGRFATLTLQERRDRGAEKEHKRYHSLGNISRGGSGGNSSNDKLSGPAP 560 
WD40-rpts      _____________WD 9________________)                                              

Query      561 RSRLDPAKVLGTALCPRIHEVPLLEPLVCKKIAQERLTVLLFLEDCIITACQEGLICTWARPGKAGISSQPGSSPSGTVV 640 
WD40-rpts                             (________________WD10_______________)                    

10 WD40-repeats found in QUERY=ENSMUSP00000104119 (Len=640):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    64-102      3.47  258.08  0.02053        5.0%     -24.33
  WD 2:  Seg  3   100-147      4.23  289.30  0.00784       10.0%     19.72
  WD 3:  Seg  6   151-192      5.90  358.50  0.00092       15.0%     52.58
  WD 4:  Seg 12   230-267      4.99  320.93  0.00294       12.5%     29.51
  WD 5:  Seg 16   271-309      9.01  486.96  1.7e-05       27.5%     54.91
  WD 6:  Seg 20   313-351      9.37  501.91  1.1e-05       30.0%     53.72
  WD 7:  Seg 24   355-396      7.60  428.73  0.00010       30.0%     35.18
  WD 8:  Seg 27   397-436      5.77  353.00  0.00109       20.0%     38.61
  WD 9:  Seg 31   476-514      6.45  381.10  0.00045       17.5%     25.44
  WD10:  Seg 36   584-620      3.11  243.15  0.03243       20.0%     45.24

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   64-102    -PA--------AASGPGAAGP---ASSPPPAGP---GPG----PALPAVRLSLVRLGD
   WD 2  100-147    LGDPDGAGEPPSTPSGLGAGG---DRVCFNLGR---ELY----FYPGCCRSGSQRSID
   WD 3  151-192    -PI--------DKRIYKGTQPTCHDFNQFTAAT---ETI----SLLVGFSAGQVQYLD
   WD 4  230-267    HAS--------GHLYL--YNV---SHPCTSTPP---QYS----LLKQGEGFAVYAAKS
   WD 5  271-309    -RN--------PLAKWAVGEG---PLNEFAFSP---DGR----HLACVSQDGCLRVFH
   WD 6  313-351    -ML--------LRGLMKSYFG---GLLCVCWSP---DGR----YVVTGGEDDLVTVWS
   WD 7  355-396    -GR--------VVARGHGHKS---WVNAVAFDPYTTRAE----EAASASADGDPSGEE
   WD 8  397-436    ------------EEPEVTSSD---TGAPVSPLP---KAGSITYRFGSAGQDTQFCLWD
   WD 9  476-514    -GP--------LPRSLSRSNS---LPHPAGGGK---AGG----PSASMEPGIPFSIGR
   WD10  584-620    -LE--------PLVCKKIAQE---RLTVLLFLE---DC------IITACQEGLICTWA

   WD40 Template    TGE--------CLRTLSGHTS---GVTSVSFSP---DGK----RLVSGSEDGTIKVWD