Input parameters:

  Query = ENSMUSP00000104118 (Len=650)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000104118, Len=650):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGDCAEIKSQFRTREGFYKLLPGDATRRSGPTSAQTPAPPQPTQPPPGPAAASGPGAAGPASSPPPAGPGPGPALPAVRL 80  
WD40-rpts                                                                                      

Query       81 SLVRLGDPDGAGEPPSTPSGLGAGGDRVCFNLGRELYFYPGCCRSGSQRSIDLNKPIDKRIYKGTQPTCHDFNQFTAATE 160 
WD40-rpts          (_____________________WD 1_____________________)   (__________________WD 2__

Query      161 TISLLVGFSAGQVQYLDLIKKDTSKLFNEERLIDKTKVTYLKWLPESESLFLASHASGHLYLYNVSHPCTSTPPQYSLLK 240 
WD40-rpts      ________________)                                     (________________WD 3_____

Query      241 QGEGFAVYAAKSKAPRNPLAKWAVGEGPLNEFAFSPDGRHLACVSQDGCLRVFHFDSMLLRGLMKSYFGGLLCVCWSPDG 320 
WD40-rpts      ___________)   (_________________WD 4________________)   (_________________WD 5_

Query      321 RYVVTGGEDDLVTVWSFTEGRVVARGHGHKSWVNAVAFDPYTTRAEEAASASADGDPSGEEEEPEVTSSDTGAPVSPLPK 400 
WD40-rpts      _______________)   (__________________WD 6__________________)(_________________W

Query      401 AGSITYRFGSAGQDTQFCLWDLTEDVLSPHPSLARTRTLPGTPGATPPASGSSRAGETGAGPLPRSLSRSNSLPHPAGGG 480 
WD40-rpts      D 7_________________)                                       (_________________WD

Query      481 KAGGPSASMEPGIPFSIGRFATLTLQERRDRGAEKEHKRYHSLGNISRGGSGGNSSNDKLSGPAPRSRLDPAKVLGTALC 560 
WD40-rpts       8________________)(__________________WD 9_________________)                (___

Query      561 PRIHEVPLLEPLVCKKIAQERLTVLLFLEDCIITACQEGLICTWARPGKAFTDEETEAQAGQASWPRSPSKSVVEGISSQ 640 
WD40-rpts      ___________________WD10_____________________)                                   

Query      641 PGSSPSGTVV 650 
WD40-rpts                

10 WD40-repeats found in QUERY=ENSMUSP00000104118 (Len=650):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    85-132      4.43  297.71  0.00604       10.0%     22.04
  WD 2:  Seg  7   136-177      5.88  357.58  0.00094       15.0%     52.39
  WD 3:  Seg 13   215-252      4.73  310.25  0.00410       12.5%     17.55
  WD 4:  Seg 16   256-294      8.92  483.10  1.9e-05       27.5%     55.58
  WD 5:  Seg 20   298-336      9.34  500.61  1.1e-05       30.0%     54.72
  WD 6:  Seg 24   340-381      7.47  423.35  0.00012       30.0%     34.71
  WD 7:  Seg 27   382-421      5.83  355.29  0.00101       20.0%     37.60
  WD 8:  Seg 31   461-499      6.36  377.43  0.00051       17.5%     27.63
  WD 9:  Seg 34   500-540      3.02  239.40  0.03636       10.0%     10.38
  WD10:  Seg 37   557-605      5.76  352.60  0.00110       22.5%     46.05

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   85-132    LGDPDGAGEPPS-----------TPSGLGAGG---DRVCFNLGR---ELY----FYPGCCRSGSQRSID
   WD 2  136-177    -PI--------D-----------KRIYKGTQPTCHDFNQFTAAT---ETI----SLLVGFSAGQVQYLD
   WD 3  215-252    HAS---------------------GHLYLYNV---SHPCTSTPP---QYS----LLKQGEGFAVYAAKS
   WD 4  256-294    -RN--------P-----------LAKWAVGEG---PLNEFAFSP---DGR----HLACVSQDGCLRVFH
   WD 5  298-336    -ML--------L-----------RGLMKSYFG---GLLCVCWSP---DGR----YVVTGGEDDLVTVWS
   WD 6  340-381    -GR--------V-----------VARGHGHKS---WVNAVAFDPYTTRAE----EAASASADGDPSGEE
   WD 7  382-421    -----------------------EEPEVTSSD---TGAPVSPLP---KAGSITYRFGSAGQDTQFCLWD
   WD 8  461-499    -GP--------L-----------PRSLSRSNS---LPHPAGGGK---AGG----PSASMEPGIPFSIGR
   WD 9  500-540    FAT-------LT-----------LQERRDRGA---EKEHKRYHS---LGN----ISRGGSGGNSSNDKL
   WD10  557-605    TAL--------CPRIHEVPLLEPLVCKKIAQE---RLTVLLFLE---DC------IITACQEGLICTWA

   WD40 Template    TGE--------C-----------LRTLSGHTS---GVTSVSFSP---DGK----RLVSGSEDGTIKVWD