Input parameters:

  Query = ENSMUSP00000104028 (Len=471)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000104028, Len=471):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSAFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGH 80  
WD40-rpts                                                                            (_________

Query       81 TGPVLDIDWCPHNDNVIASASDDTTVMVWQIPDYTPVRNITEPVITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWN 160 
WD40-rpts      ________WD 1_________________)          (_________________WD 2_________________)

Query      161 VGTGEVLLSLDDIHPDVIHSVCWNSNGSLLATTCKDKTLRIIDPRKSQVVAERFAAHEGMRPMRAVFTRLGHIFTTGFTR 240 
WD40-rpts         (_________________WD 3_________________)(_____________________WD 4___________

Query      241 MSQRELGLWDPNNFEEPVALQEMDTSNGVLLPFYDPDSSIVYLCGKGDSSIRYFEITEEPPFVHYLNTFSSKEPQRGMGF 320 
WD40-rpts      _________)(____________________WD 5___________________) (__________________WD 6_

Query      321 MPKRGLDVSKCEIARFYKLHERKCEPIIMTVPRKSDLFQDDLYPDTPGPEPALEADEWLSGQDAEPVLISLKEGYVPPKH 400 
WD40-rpts      _________________)                                                              

Query      401 RELRVTKRNILDVRPPASPRRSQSASEAPLSQHTLETLLEEIKALRDRVQAQEERITALENMLCELVDGTD 471 
WD40-rpts                                                                             

6 WD40-repeats found in QUERY=ENSMUSP00000104028 (Len=471):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    71-110      7.10  407.83  0.00020       27.5%     43.95
  WD 2:  Seg  9   121-160      6.85  397.71  0.00027       32.5%     50.81
  WD 3:  Seg 13   164-203      7.37  419.11  0.00014       30.0%     55.58
  WD 4:  Seg 17   204-250      3.23  248.26  0.02774       15.0%     47.59
  WD 5:  Seg 21   251-295      4.34  293.90  0.00680       17.5%     39.83
  WD 6:  Seg 25   297-338      3.12  243.35  0.03223       17.5%     38.82

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-110    -DK---NYPLVT----G-HTG-PVLDIDWCPHNDNV-I-ASAS---DDTTVMVWQ
   WD 2  121-160    -TE---PVITLE----G-HSK-RVGILSWHP-TARNVL-LSAG---GDNVIIIWN
   WD 3  164-203    -GE---VLLSLD----DIHPD-VIHSVCWNS-NGSL-L-ATTC---KDKTLRIID
   WD 4  204-250    PRKSQVVAERFA----A-HEGMRPMRAVFTR-LGHI-F-TTGFTRMSQRELGLWD
   WD 5  251-295    PNN---FEEPVALQEMD-TSN-GVLLPFYDP-DSSI-VYLCGK---GDSSIRYFE
   WD 6  297-338    TEE-PPFVHYLN----T-FSS-KEPQRGMGF-MPKR-G-LDVS---KCEIARFYK

   WD40 Template    TGE---CLRTLS----G-HTS-GVTSVSFSP-DGKR-L-VSGS---EDGTIKVWD