WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000103825 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000103825 (Len=1524) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000103825, Len=1524): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MMAALAAGGYTRSDTIEKLSSVMAGVPARRNQSSPPPAPPLCLRRRTRLAAAPEDTVQNRVTLEKVLGITAQNSSGLTCD 80
WD40-rpts (________________WD 1________________)
Query 81 PGTGHVAYLAGCVVVVLNPKENKQQHIFNTTRKSLSALAFSPDGKYIVTGENGHRPAVRIWDVEEKTQVAEMLGHKYGVA 160
WD40-rpts (__________________WD 2_________________) (______________
Query 161 CVAFSPNMKHIVSMGYQHDMVLNVWDWKKDIVVASNKVSCRVIALSFSEDSSYFVTVGNRHVRFWFLEASTEAKVTSTVP 240
WD40-rpts ____WD 3_________________) (________________WD 4________________)
Query 241 LVGRSGILGELHNNIFCGVACGRGRMAGNTFCVSYSGLLCQFNEKRVLDKWINLKVSLSSCLCVSDELIFCGCTDGIVRI 320
WD40-rpts (_________________WD 5________________
Query 321 FQAHSLLYLTNLPKPHYLGVDVAHGLDSSFLFHRKAEAVYPDTVALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWS 400
WD40-rpts _) (____________________WD 6____________________)(___________
Query 401 ELFHSSFVWNVEVYPEFEDQRACLPSGTFLTCSSDNTIRFWNLDSASDTRWQKNIFSDSLLKVVYVENDIQHLQDLSHFP 480
WD40-rpts _____________WD 7________________________)
Query 481 DRGSENGTPMDMKAGVRVMQVSPDGQHLASGDRSGNLRIHELHFMDELIKVEAHDAEVLCLEYSKPETGVTLLASASRDR 560
WD40-rpts (_________________WD 8________________) (__________________WD 9_____________
Query 561 LIHVLNVEKNYNLEQTLDDHSSSITAIKFAGTRDVQMISCGADKSIYFRSAQQASDGLHFVRTHHVAEKTTLYDMDIDIT 640
WD40-rpts _____) (_________________WD10________________)(_____________________WD11____
Query 641 QKYVAVACQDRNVRVYNTVSGKQKKCYKGSQGDEGSLLKVHVDPSGTFLATSCSDKSISLIDFYSGECVAKMFGHSEIVT 720
WD40-rpts ________________) (_________________WD12________________) (______________
Query 721 GMKFTYDCRHLITVSGDSCVFIWHLGPEITTCMKQHLLEINHQEQQQQPKDQKWSGPPSQETYASTPSEIRSLSPGEQTE 800
WD40-rpts ___WD13________________)
Query 801 DEMEEECEPEELLKTPSKDSLDPDPRCLLTNGKLPLWAKRLLGDDDVADSSAFHAKRSYQPHGRWAERAEQEPLKTILDA 880
WD40-rpts (______________________WD14_____________________)
Query 881 WSLDSYFTPMKPENLQDSVLDSVEPQNLAGLLSECSLGNGHTSPGEGLVSYLLHPELGSPKEDNRGHPSYLPLQREATEA 960
WD40-rpts (_________________WD15_
Query 961 SELILCSPEAEVSLTGMHREYYEEETEAGPEDQQGDTYLRVSSVSSKDQSPPEDSGESEAELECSFAAAHSSAPQTDPGP 1040
WD40-rpts _______________)
Query 1041 HLTMTAGKPEYPSTEELSQPELPGLGNGSLPQTPEQEKFLRHHFETLTDAPTEELFHGSLGDIKISETEDYFFNPRLSIS 1120
WD40-rpts
Query 1121 TQFLSRLQKTSRCPPRLPLHLMKSPEAQPVGQGGNQPKAGPLRAGTGYMSSDGTNVLSGQKAEETQEALSLLDRKPPTPT 1200
WD40-rpts
Query 1201 SVLTTGREQSISAPSSCSYLESTTSSHAKTTRSISLGDSEGPVTAELPQSLHKPLSPGQELQAIPTTVALTSSIKDHEPA 1280
WD40-rpts
Query 1281 PLSWGNHEARASLKLTLSSVCEQLLSPPPQEPPITHVWSQEPVDVPPSMAVTVASFCAPSPVDMSTLGLHSSMFLPKTSA 1360
WD40-rpts
Query 1361 SGPLTPPAHLQLLETRSRVPGSTAALLEPTPDASGVIADSPGHWDTEVPTPELLGSVESVLHRLQTAFQEALDLYRMLVS 1440
WD40-rpts
Query 1441 SSQLGPEQQQAQTELASTFHWILNQLEASNCMAAANLAPPQTLPSPDPLSLPTLCPLASPNLQALLEHYSELLVQAVRRK 1520
WD40-rpts
Query 1521 ARGD 1524
WD40-rpts
 15 WD40-repeats found in QUERY=ENSMUSP00000103825 (Len=1524): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 25-62 2.77 228.93 0.04997 15.0% 23.99 WD 2: Seg 9 102-142 6.48 382.35 0.00044 25.0% 56.43 WD 3: Seg 13 146-186 7.60 428.63 0.00010 37.5% 56.16 WD 4: Seg 17 189-226 4.86 315.24 0.00351 17.5% 52.49 WD 5: Seg 25 283-322 5.50 341.88 0.00154 10.0% 50.56 WD 6: Seg 31 343-388 5.68 349.21 0.00122 20.0% 50.58 WD 7: Seg 35 389-442 5.27 332.35 0.00206 25.0% 49.98 WD 8: Seg 42 483-521 7.55 426.58 0.00011 30.0% 45.29 WD 9: Seg 45 525-566 6.21 371.07 0.00062 25.0% 56.77 WD10: Seg 49 572-610 6.22 371.70 0.00061 22.5% 48.60 WD11: Seg 52 611-657 4.67 307.67 0.00444 10.0% 47.18 WD12: Seg 56 664-702 6.91 400.07 0.00025 22.5% 51.47 WD13: Seg 60 706-744 8.98 485.64 1.8e-05 32.5% 57.59 WD14: Seg 69 831-879 4.03 281.26 0.01005 12.5% 27.52 WD15: Seg 71 938-976 4.07 282.69 0.00961 15.0% 15.73Multiple sequence alignment of 15 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 25-62 -GVP------A---------RRNQ-------SSPPPAPPLCLRRRT----------RLAAAP--ED--TVQNRVT WD 2 102-142 -NKQ------Q---------HIFN-------TTRKSLSALAFSPDGK---------YIVTGE--NGHRPAVRIWD WD 3 146-186 -KTQ------V---------AEML-------GHKYGVACVAFSPNMK---------HIVSMGYQHD--MVLNVWD WD 4 189-226 -KDI------V---------VASN-------KVSCRVIALSFSEDSS---------YFVTVG---N--RHVRFWF WD 5 283-322 NEKR------V---------LDKW-------INLKVSLSSCLCVSDE---------LIFCGC--TD--GIVRIFQ WD 6 343-388 AHGLDSSFLFH---------RKAE-------AVYPDTVALTFDPVHQ---------WLSCVY--KD--HSIYIWD WD 7 389-442 VKDI-DEVSKI---------WSEL-------FHSSFVWNVEVYPEFEDQRACLPSGTFLTCS--SD--NTIRFWN WD 8 483-521 -GSE------N---------GTPM-------DMKAGVRVMQVSPDGQ---------HLASGD--RS--GNLRIHE WD 9 525-566 -MDE------L---------IKVE-------AHDAEVLCLEYSKPET------GVTLLASAS--RD--RLIHVLN WD10 572-610 --NL------E---------QTLD-------DHSSSITAIKFAGTRD--------VQMISCG--AD--KSIYFRS WD11 611-657 AQQA------S---------DGLHFVRTHHVAEKTTLYDMDIDITQK---------YVAVAC--QD--RNVRVYN WD12 664-702 -KKC------Y---------KGSQ-------GDEGSLLKVHVDPSGT---------FLATSC--SD--KSISLID WD13 706-744 -GEC------V---------AKMF-------GHSEIVTGMKFTYDCR---------HLITVS--GD--SCVFIWH WD14 831-879 NGKL------PLWAKRLLGDDDVA-------DSSAFHAKRSYQPHGR---------WAERAE--QE--PLKTILD WD15 938-976 -GSP------K---------EDNR-------GHPSYLPLQREATEAS---------ELILCS--PE--AEVSLTG WD40 Template TGEC------L---------RTLS-------GHTSGVTSVSFSPDGK---------RLVSGS--ED--GTIKVWD |
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