Input parameters:

  Query = ENSMUSP00000103692 (Len=824)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000103692, Len=824):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNETMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGSPLTEEKEKIVWVRFENADLNDTSRNLEFH 80  
WD40-rpts                                                                                      

Query       81 ELHSTGNEPPLLVMIGYSDGMQVWGIPISGEAQELFSVRHGPVRAARILPAPQLGAQKCDNFAEKRPLLGVCKSIGSSGT 160 
WD40-rpts                                                                                      

Query      161 TPPYCCVDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWL 240 
WD40-rpts                                                                                      

Query      241 AYAENKLIRCHQSRGGACGDNIQSYTATVLSAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVALHCNSRRSPLVPGIIT 320 
WD40-rpts                                                                                      

Query      321 VIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLH 400 
WD40-rpts                      (___________________WD 1___________________)                    

Query      401 RGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRTHMSPRVVNRMSRFQKSAGLEEIEQELTSKQGGRCS 480 
WD40-rpts      (______________WD 2_____________)                                               

Query      481 PVPGLSSSPSGSPLHGKLTSQDSYNNFTNNNPGNPRLSPLPSLMVVTPLAQIKQPMTLGTITKRTGPYLFGAGCFSIKAP 560 
WD40-rpts                                                                                      

Query      561 CKVKSPPQISPSKSMGGEFCVAAVFGTSRSWFANNAGLKREKDQSKQVVVESLYIISCYGTLVEHMIEPRPISTAPKISD 640 
WD40-rpts                                                                                      

Query      641 DTPLEIMTSPRASWTLVRTPQWNELQPPFNANHPLLLAAEAVQYYQLLLAGSLPPGSPGPITRHGSYDSLASDHSGQEDE 720 
WD40-rpts                                                                                      

Query      721 EWLSQVEIVTHTGPHRRLWMGPQFHFKTIQTSGQTTVISTSSSVLQSHGPSDTPQPLLDFDTDDLDLNSLRIQPVRSDPV 800 
WD40-rpts                                                                                      

Query      801 SMPGSSRAVSDRRGVSTVTDAASG 824 
WD40-rpts                              

2 WD40-repeats found in QUERY=ENSMUSP00000103692 (Len=824):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 18   337-380      3.99  279.38  0.01065       20.0%     50.90
  WD 2:  Seg 23   401-433      3.08  242.04  0.03355       25.0%     42.30

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  337-380    DSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQ
   WD 2  401-433    RGE---T-------EAKVQDICFSHDCRWVVVSTLRGT-SHVFP

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD