Input parameters:

  Query = ENSMUSP00000103306 (Len=710)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000103306, Len=710):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNQELLSVGSKRRRTGGSLRGNASSSQVDEGQMNRVVEEDPQQQARHQEEEHTARNGELVGANPRPGDQNDTQQGQVEEN 80  
WD40-rpts                                                                                      

Query       81 NNRFISVDEDSSGNQEEQEEDEEHAGEQEEEEEEEEEEEEMDQESDDFDPSDDSSREDEHTHNSNVTNCSSVSDLPAHQL 160 
WD40-rpts                                                                                      

Query      161 SSPFYTKTTKMKRKLDHGSEVRSFSLGKKPCKVSDYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEW 240 
WD40-rpts                                                                                      

Query      241 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAED 320 
WD40-rpts                                                                                      

Query      321 NLLWREKCKEEGIDEPLHIKRRKIIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSG 400 
WD40-rpts                                                          (________________WD 1_______

Query      401 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 480 
WD40-rpts      _________)   (________________WD 2_______________)   (________________WD 3______

Query      481 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSG 560 
WD40-rpts      _________)   (________________WD 4_______________)   (________________WD 5______

Query      561 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFV 640 
WD40-rpts      _________)   (________________WD 6_______________)   (_________________WD 7_____

Query      641 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 710 
WD40-rpts      ____________)   (_____________________WD 8_____________________)      

8 WD40-repeats found in QUERY=ENSMUSP00000103306 (Len=710):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   373-410      6.85  397.60  0.00027       37.5%     46.18
  WD 2:  Seg  6   414-450      9.01  486.87  1.7e-05       50.0%     51.93
  WD 3:  Seg 10   454-490      8.96  484.92  1.8e-05       52.5%     50.14
  WD 4:  Seg 14   494-530      8.98  485.58  1.8e-05       47.5%     52.80
  WD 5:  Seg 18   534-570      8.86  480.85  2.1e-05       52.5%     52.35
  WD 6:  Seg 22   574-610      8.41  462.19  3.7e-05       40.0%     53.61
  WD 7:  Seg 26   614-653      7.85  438.89  7.6e-05       35.0%     47.93
  WD 8:  Seg 30   657-704      4.92  317.80  0.00324       32.5%     53.93

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  373-410    LKSPKVL-----KGHDDHVITC--LQFCGNRIVSGSDDNT----LKVWS
   WD 2  414-450    GKCLRTL-----VGHTGGVWSS-QMRDN--IIISGSTDRT----LKVWN
   WD 3  454-490    GECIHTL-----YGHTSTVRCM-HLHE--KRVVSGSRDAT----LRVWD
   WD 4  494-530    GQCLHVL-----MGHVAAVRCV-QY--DGRRVVSGAYDFM----VKVWD
   WD 5  534-570    ETCLHTL-----QGHTNRVYSL-QF--DGIHVVSGSLDTS----IRVWD
   WD 6  574-610    GNCIHTL-----TGHQSLTSGM-ELKDN--ILVSGNADST----VKIWD
   WD 7  614-653    GQCLQTL-----QGPSKHQSAVTCLQFNKNFVITSSDDGT----VKLWD
   WD 8  657-704    GEFIRNLVTLESGGSGGVVWRI-RASNTKLVCAVGSRNGTEETKLLVLD

   WD40 Template    GECLRTL-----SGHTSGVTSV-SFSPDGKRLVSGSEDGT----IKVWD