Input parameters:

  Query = ENSMUSP00000103302 (Len=589)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000103302, Len=589):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKPGKAPVNHGLVPVDLKSAKDPLPHQTVMKIFSISIIAQGLPFCRRRMKRKLDHGSEVRSFSLGKKPCKVSDYTSTTG 80  
WD40-rpts                                                                                      

Query       81 LVPCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQR 160 
WD40-rpts                                                                                      

Query      161 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKIIKPGFIHSPWKSAYIRQ 240 
WD40-rpts                                                                                      

Query      241 HRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 320 
WD40-rpts                 (________________WD 1________________)   (________________WD 2_______

Query      321 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 400 
WD40-rpts      ________)   (________________WD 3_______________)   (________________WD 4_______

Query      401 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 480 
WD40-rpts      ________)   (________________WD 5_______________)   (________________WD 6_______

Query      481 ADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 560 
WD40-rpts      ________)   (_________________WD 7_________________)   (_____________________WD 

Query      561 NTKLVCAVGSRNGTEETKLLVLDFDVDMK 589 
WD40-rpts      8_____________________)      

8 WD40-repeats found in QUERY=ENSMUSP00000103302 (Len=589):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   252-289      6.71  391.78  0.00033       37.5%     46.42
  WD 2:  Seg  7   293-329      9.08  489.79  1.6e-05       50.0%     52.89
  WD 3:  Seg 11   333-369      9.01  486.96  1.7e-05       52.5%     52.24
  WD 4:  Seg 15   373-409      9.02  487.35  1.7e-05       47.5%     53.46
  WD 5:  Seg 19   413-449      8.90  482.23  2.0e-05       52.5%     53.21
  WD 6:  Seg 23   453-489      8.55  467.64  3.1e-05       40.0%     53.52
  WD 7:  Seg 27   493-532      8.17  452.14  5.0e-05       35.0%     48.16
  WD 8:  Seg 31   536-583      5.35  335.69  0.00186       32.5%     55.14

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  252-289    LKSPKVL-----KGHDDHVITC--LQFCGNRIVSGSDDNT----LKVWS
   WD 2  293-329    GKCLRTL-----VGHTGGVWSS-QMRDN--IIISGSTDRT----LKVWN
   WD 3  333-369    GECIHTL-----YGHTSTVRCM-HLHE--KRVVSGSRDAT----LRVWD
   WD 4  373-409    GQCLHVL-----MGHVAAVRCV-QY--DGRRVVSGAYDFM----VKVWD
   WD 5  413-449    ETCLHTL-----QGHTNRVYSL-QF--DGIHVVSGSLDTS----IRVWD
   WD 6  453-489    GNCIHTL-----TGHQSLTSGM-ELKDN--ILVSGNADST----VKIWD
   WD 7  493-532    GQCLQTL-----QGPSKHQSAVTCLQFNKNFVITSSDDGT----VKLWD
   WD 8  536-583    GEFIRNLVTLESGGSGGVVWRI-RASNTKLVCAVGSRNGTEETKLLVLD

   WD40 Template    GECLRTL-----SGHTSGVTSV-SFSPDGKRLVSGSEDGT----IKVWD