Input parameters:

  Query = ENSMUSP00000103280 (Len=1093)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000103280, Len=1093):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTFVPVIPEAYSHVLAEFESLDPLLTALRLDSSRLRCTSIAVSRKWLALGSTGGGLNLIQKDGWKQRLFLSHREGAISQI 80  
WD40-rpts                                  (_____________WD 1_____________)   (________________

Query       81 ACCSHDDDYVAVATSQGLVVVWELNQERRGKPERIHVSSEHKGRKVTALCWDTAVLRVFVGDHVGKVSAIKLNTLKQAKA 160 
WD40-rpts      _WD 2_________________) (_____________________WD 3____________________)         

Query      161 AAAFVMFPVQTVLTVDSCVVQLDYLDGRLLVSSLTRSFLCDTEREKFWKIGNKERHGEYGACFFPGRCAGGQQPVIYCAR 240 
WD40-rpts                                                                                      

Query      241 PGSRMWEVNFDGEVLSTHQFKKLLSMPPLPVITARSEPQYDHTVGSSQSLAFPKLLHLSEHCVLTWTEKGIYIFIPQNVQ 320 
WD40-rpts                                                                                      

Query      321 VLLWSEVKERLLRRGLWDLAARTCCLFQNSIITSRARKTLTADKLEHLKSQLDLTACSELISQLDDLILRFEPLESACSS 400 
WD40-rpts                                                                                      

Query      401 RRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTFSEDERLKEFASHQEEEQPEQGCGANRNEESASHSPVMS 480 
WD40-rpts                                                                                      

Query      481 EVDKSEAFLPFSIALPFRSPSPLVSLQAVKDSVSSFVRKTTEKIGTLHGSPELKEPFESKDADRAHEEEVSAVTCPLEED 560 
WD40-rpts                                                                                      

Query      561 TEEKEIHQPPKEDRLQELTAATAEAMTKLLDPLVLFEPKVLRMVLLEWLSQLEKTFAMKDFPGISNTSSPTVKSNLGAHL 640 
WD40-rpts                                                                                      

Query      641 LGETEKRVLDEESGEGRRVSLVTEEAGGQITCDPVSNLSEPSADRFRVCSPYAITNSLQRDLAELTTLCLELNVLTSAME 720 
WD40-rpts                                                                                      

Query      721 SVGGHVDRASQQLSPEILACRFLKKYFFLLDLKRAKESIKLTYDSPCVWDTFVEGLKEMARSNPAYTELEEGDLPTGLQL 800 
WD40-rpts                                                                                      

Query      801 LDGSVPSDSPLLIAFATRLYDRFGESALRACIKFYPSISPSDIAQLCRHHPAQFLAYLDSLVKSRPEDQWPSFLEFLLQP 880 
WD40-rpts                                                                                      

Query      881 ESLRLEWLLLAVSHDAPPSTSTVDDEGHPRPHSHLLSWGYSQLILLLIKLPADFTTKEKMTDICRSYGFWPGYLTLCLEL 960 
WD40-rpts                                                                                      

Query      961 ERRREAFTNIVYLNDISLMEGDNGWIPETLEEWKLLLHLLQTKSTRPAPQESLNGSLSDGPAPINVENVALLLAKAMGPD 1040
WD40-rpts                                                                                      

Query     1041 RAWSLLQECGLALELSEKFTRTCDILRIAERRQRALIQGMLEKCDRFLWSQQA 1093
WD40-rpts                                                           

3 WD40-repeats found in QUERY=ENSMUSP00000103280 (Len=1093):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    29-60       2.90  234.46  0.04226       17.5%     41.94
  WD 2:  Seg  4    64-103      4.13  285.15  0.00891       17.5%     51.76
  WD 3:  Seg  8   105-151      3.50  259.38  0.01972       15.0%     38.95

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   29-60     ---------------RLDSSRLRCTS-IAVSRKWLALGSTGGGLNLIQ
   WD 2   64-103    -WKQRL-------FLSHREGAISQIACCSHDDDYVAVATSQGLVVVWE
   WD 3  105-151    NQERRGKPERIHVSSEHKGRKVTALC-WDTAVLRVFVGDHVGKVSAIK

   WD40 Template    TGECLR-------TLSGHTSGVTSVS-FSPDGKRLVSGSEDGTIKVWD