Input parameters:

  Query = ENSMUSP00000103076 (Len=366)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000103076, Len=366):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLLLDGQLKPALPQKVFCRLWAVMGKLQSKLRHSTYLYRPDGIIEERVQTKAPQEYIPVHVDTVSVIATLNSDLCISGGK 80  
WD40-rpts                                                        (________________WD 1_________

Query       81 DKTAVAYNWKTGRMVKRFTGHEREITKIACIPKANQFFSASRDKTVLMWDLQGSSHPRQQLSGHAMVVTGLAVSPDSSQL 160 
WD40-rpts      _______)   (_________________WD 2________________)    (_________________WD 3____

Query      161 CTGSRDNSLLLWDVGTGQCVERASVSRNLVTHLCWVPSEPYIVQTSEDKTIRLWDSRGLQMAHMFPTKQHIQTHCEVSVD 240 
WD40-rpts      ____________)   (_________________WD 4________________)   (___________________WD

Query      241 GHTCISCSSGFGGEGCEATLWDLRQTRDRMCEYKGHFQTVASCVFLPKSTALMPMIATSAHDSKVKIWNQDTGACLSTLS 320 
WD40-rpts       5___________________)    (___________________WD 6__________________)   (_______

Query      321 LDGSGPLTSLAVGDISSLLCASFYRGVHLLRVDHSQGLELQEVAAF 366 
WD40-rpts      __________WD 7________________)               

7 WD40-repeats found in QUERY=ENSMUSP00000103076 (Len=366):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    51-88       7.28  415.21  0.00016       20.0%     49.44
  WD 2:  Seg 10    92-130      9.77  518.39  6.4e-06       27.5%     56.46
  WD 3:  Seg 14   135-173     10.05  529.93  4.5e-06       37.5%     53.90
  WD 4:  Seg 18   177-215      9.87  522.49  5.6e-06       35.0%     54.03
  WD 5:  Seg 22   219-262      7.44  421.83  0.00013       22.5%     45.56
  WD 6:  Seg 26   267-309      7.89  440.79  7.1e-05       25.0%     46.23
  WD 7:  Seg 30   313-351      5.97  361.30  0.00084       25.0%     53.74

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   51-88     KAPQEYIP-VHVDTV-SVIATLNSDLC----IS-----GGKDKTAVAYN
   WD 2   92-130    GRMVKRFT-GHEREITKIACIPKANQF----FS-----ASRDKTVLMWD
   WD 3  135-173    SHPRQQLS-GHAMVVTGLAVSPDSSQL----CT-----GSRDNSLLLWD
   WD 4  177-215    GQCVERAS-VSRNLVTHLCWVPSEPYI----VQ-----TSEDKTIRLWD
   WD 5  219-262    LQMAHMFP-TKQHIQTHCEVSVDGHTC----ISCSSGFGGEGCEATLWD
   WD 6  267-309    RDRMCEYK-GHFQTVASCVFLPKSTALMPMIAT-----SAHDSKVKIWN
   WD 7  313-351    GACLSTLSLDGSGPLTSLAVGDISS-L----LC-----ASFYRGVHLLR

   WD40 Template    GECLRTLS-GHTSGVTSVSFSPDGKRL----VS-----GSEDGTIKVWD