Input parameters:

  Query = ENSMUSP00000102973 (Len=696)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000102973, Len=696):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPQSRHPTPHQAAGQPFKFTIPESLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTE 80  
WD40-rpts                                                                                      

Query       81 IAKRLNTICAQVIPFLSQEHQQQVAQAVERAKQVTMAELNAIIGSNSLLVPDSLRGTDKRRNGPEFSSDIKKRKVDDKDN 160 
WD40-rpts                                                                                      

Query      161 YDSDGDKSDDNLVVDVSNEDPSSPHASPTHSPRENGIDKNRLLKKDASGSPASTASSGSSSSLKSKEVSLHEKANTPVLK 240 
WD40-rpts                                                                                      

Query      241 SSTPTPRSDMPTPGTSATPGLRPGLGKPPAMEPLVNQAAAGLRTPLAVPGPYPAPFGMVPHAGMNGELTSPGAAYAGLHS 320 
WD40-rpts                                                                                      

Query      321 MSPQMSAAAAAAAAAVVAYGRSPMVGFDPPPHMRVPSIPPNLAGIPGGKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH 400 
WD40-rpts                                                                       (______________

Query      401 ARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 480 
WD40-rpts      _________WD 1_______________________)(_____________________WD 2_________________

Query      481 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 560 
WD40-rpts      ___)     (_________________WD 3________________)   (_________________WD 4_______

Query      561 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV 640 
WD40-rpts      _________)(__________________WD 5_________________)(__________________WD 6______

Query      641 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 696 
WD40-rpts      ___________)(__________________WD 7_________________)   

7 WD40-repeats found in QUERY=ENSMUSP00000102973 (Len=696):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   386-437      5.94  359.91  0.00088       25.0%     41.77
  WD 2:  Seg  9   438-484      8.02  446.00  6.1e-05       25.0%     48.75
  WD 3:  Seg 12   490-528      8.88  481.46  2.0e-05       30.0%     55.84
  WD 4:  Seg 16   532-570     10.03  528.97  4.6e-06       35.0%     53.23
  WD 5:  Seg 20   571-611      7.31  416.71  0.00015       25.0%     52.71
  WD 6:  Seg 24   612-652      8.52  466.43  3.2e-05       30.0%     54.08
  WD 7:  Seg 28   653-693      7.81  437.17  8.0e-05       32.5%     53.22

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  386-437    PFP-------PDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWD
   WD 2  438-484    ISHPGNKSPVSQLDCL-------------NRDNYIRSCKLLPDGCTLIVGGEASTLSIWD
   WD 3  490-528    -PR-------IKAELT-------------SSAPACYALAISPDSKVCFSCCSDGNIAVWD
   WD 4  532-570    -QT-------LVRQFQ-------------GHTDGASCIDISNDGTKLWTGGLDNTVRSWD
   WD 5  571-611    LRE-------GRQLQQ------------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 6  612-652    VNK------PDKYQLH-------------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 7  653-693    TPY------GASIFQS-------------KESSSVLSCDISVDDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTLS-------------GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD