Input parameters:

  Query = ENSMUSP00000102972 (Len=650)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000102972, Len=650):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPQSRHPTPHQAAGQPFKFTIPESLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQSN 80  
WD40-rpts                                                                                      

Query       81 SLLVPDSLRGTDKRRNGPEFSSDIKKRKVDDKDNYDSDGDKSDDNLVVDVSNEDPSSPHASPTHSPRENGIDKNRLLKKD 160 
WD40-rpts                                                                                      

Query      161 ASGSPASTASSGSSSSLKSKEVSLHEKANTPVLKSSTPTPRSDMPTPGTSATPGLRPGLGKPPAMEPLVNQAAAGLRTPL 240 
WD40-rpts                                                                                      

Query      241 AVPGPYPAPFGMVPHAGMNGELTSPGAAYAGLHSMSPQMSAAAAAAAAAVVAYGRSPMVGFDPPPHMRVPSIPPNLAGIP 320 
WD40-rpts                                                                           (__________

Query      321 GGKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP 400 
WD40-rpts      ________WD 1__________________)         (_____________WD 2____________)(________

Query      401 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 480 
WD40-rpts      _____________WD 3____________________)     (_________________WD 4_______________

Query      481 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN 560 
WD40-rpts      _)   (_________________WD 5________________)(__________________WD 6_____________

Query      561 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 640 
WD40-rpts      ____)(__________________WD 7_________________)(__________________WD 8___________

Query      641 KKATVYEVIY 650 
WD40-rpts      ______)   

8 WD40-repeats found in QUERY=ENSMUSP00000102972 (Len=650):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   310-351      3.30  251.17  0.02538       15.0%     11.62
  WD 2:  Seg  7   361-391      5.71  350.63  0.00117       25.0%     44.45
  WD 3:  Seg 10   392-438      7.83  438.06  7.8e-05       25.0%     48.56
  WD 4:  Seg 13   444-482      8.89  481.71  2.0e-05       30.0%     55.83
  WD 5:  Seg 17   486-524     10.06  530.17  4.4e-06       35.0%     53.78
  WD 6:  Seg 21   525-565      7.26  414.40  0.00016       25.0%     50.70
  WD 7:  Seg 25   566-606      8.51  466.22  3.2e-05       30.0%     54.58
  WD 8:  Seg 29   607-647      7.79  436.36  8.2e-05       32.5%     54.41

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  310-351    PSI-------PPNLAGIPGGKPAYSFHVTADGQMQPVPFPPDALIGPGI
   WD 2  361-391    ---------------L-NHGEVVCAVTISNPTRHV-YTGG-KGCVKVWD
   WD 3  392-438    ISHPGNKSPVSQLDCL-NRDNYIRSCKLLPDGCTL-IVGGEASTLSIWD
   WD 4  444-482    -PR-------IKAELT-SSAPACYALAISPDSKVC-FSCCSDGNIAVWD
   WD 5  486-524    -QT-------LVRQFQ-GHTDGASCIDISNDGTKL-WTGGLDNTVRSWD
   WD 6  525-565    LRE-------GRQLQQHDFTSQIFSLGYCPTGEWL-AVGMESSNVEVLH
   WD 7  566-606    VNK------PDKYQLH-LHESCVLSLKFAYCGKWF-VSTGKDNLLNAWR
   WD 8  607-647    TPY------GASIFQS-KESSSVLSCDISVDDKYI-VTGSGDKKATVYE

   WD40 Template    TGE-------CLRTLS-GHTSGVTSVSFSPDGKRL-VSGSEDGTIKVWD