Input parameters:

  Query = ENSMUSP00000102481 (Len=807)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000102481, Len=807):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHSSPTSTRKQASFAASASAQPRKSISFINPSKSSAGKGYAASNPNKLAVSRTMGFLTDMKPAEKLNVPSAKTVQVLDSK 80  
WD40-rpts                                                                                      

Query       81 GVDVTPRPLYHPDPHAASAKPNKLLTSQEGSLGSDYISSYSLYQNTLNPSMLGQYTRSVLGSSSVSKSSISTTESMSEDL 160 
WD40-rpts                                                                                      

Query      161 EDSSYKRDRLASFTDVRVLRSTAEAAISKEELEKTIEIILTETETLRFFDLPTVMFSTESEEAEKIIEKNKKYETLCRNR 240 
WD40-rpts                                                                                      

Query      241 LGNDLYVERMMQTFNGAPKNKEVQCEKIILEEKGVVATTWDLYDSYNIPETLLAAKRSGYSSKGSLPAKDRDPKIQDSES 320 
WD40-rpts                                                                                      

Query      321 SSLMDIENVILAKVQEDEEDNSEAILKSDKLHQDLFYMERVLMENVFQPKLAAYRQLPVYKEHEPEEPEETLQVENLKVA 400 
WD40-rpts                                                                                      

Query      401 EDEPKKEDEEEVEMELELEIATEQSTIPANLERLWSFSCDLTKGLNVSSLSWNKANPDLLAVGYGNFGFREQKKGMACCW 480 
WD40-rpts                                                                                      

Query      481 SIKNPMWPERIYQSSYGVTSVDFSNSSPNLLAVGYHNGTVAIYNVQSSHNIPVLDSSESPQKHLGPVWQVQWIEQDRGTT 560 
WD40-rpts          (_________________WD 1_________________)           (____________________WD 2

Query      561 GDDKREILVSISADGRISKWIIRKGLDCHDLMRLKRTTATGGKKGGEKEKKGEALISRQAPGMCFAFHPKDTNIYLAGTE 640 
WD40-rpts      ____________________)                           (_________________WD 3__________

Query      641 EGLIHKCSCSYNEQYLETYRGHKGPVYKVTWNPFCPDVFLSCSADWGVMIWHQDTVKPFLSFYPTTYVVYDVSWSPKSAY 720 
WD40-rpts      _______)(___________________WD 4___________________)   (_________________WD 5___

Query      721 IFAAANENRVEIWDLQISTLDPLIVNVANPGIKFTTVLFAKETDCLLVGDSDGQVAVYELRNMPTASDTSRGDVINILLG 800 
WD40-rpts      _____________)      (_________________WD 6________________)                     

Query      801 PKTNHTG 807 
WD40-rpts             

6 WD40-repeats found in QUERY=ENSMUSP00000102481 (Len=807):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   485-524      5.73  351.30  0.00115       27.5%     50.48
  WD 2:  Seg 16   536-581      4.61  305.00  0.00482       30.0%     44.06
  WD 3:  Seg 20   609-648      3.26  249.16  0.02699       20.0%     46.39
  WD 4:  Seg 23   649-692      6.30  374.73  0.00055       27.5%     48.28
  WD 5:  Seg 26   696-734      6.67  390.31  0.00034       20.0%     54.18
  WD 6:  Seg 30   741-779      5.50  341.65  0.00155       20.0%     53.94

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  485-524    -P---MWPERIYQSSYGVTSVDF---------SNSSPNLLAVGYHNGTVAIYN
   WD 2  536-581    SS---E---SPQKHLGPVWQVQWIEQDRGTTGDD-KREILVSISADGRISKWI
   WD 3  609-648    -E---KKGEALISRQAPGMCFAF---------HPKDTNIYLAGTEEGLIHKCS
   WD 4  649-692    CSYNEQYLETYRGHKGPVYKVTW---------NPFCPDVFLSCSADWGVMIWH
   WD 5  696-734    -V---KPFLSFYPTTYVVYDVSW---------SP-KSAYIFAAANENRVEIWD
   WD 6  741-779    -D---PLIVNVANPGIKFTTVLF---------AK-ETDCLLVGDSDGQVAVYE

   WD40 Template    TG---ECLRTLSGHTSGVTSVSF---------SP-DGKRLVSGSEDGTIKVWD