Input parameters:

  Query = ENSMUSP00000102300 (Len=295)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000102300, Len=295):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEAEAADAPPGRVEAALSCFSFNQDCTSLAIGTKAGYKLFSLSSVEQLDQVHGSNEIPDVYIVERLFSSSLVVVVSHTKP 80  
WD40-rpts        (_________________WD 1________________)   (___________________WD 2____________

Query       81 RQMNVYHFKKGTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTVLDIPSNPTGLCALSINHSNSYLAYP 160 
WD40-rpts      ______)(__________________WD 3_________________)   (__________________WD 4______

Query      161 GSQSTGEIVLYDGNSLKTVCTIAAHEGTLAAITFNSSGSKLASASEKGTVIRVFSVPEGQKLYEFRRGMKRYVTISSLVF 240 
WD40-rpts      ___________)   (_________________WD 5_________________)   (__________________WD 

Query      241 SMDSQFLCASSNTETVHIFKMEHLTDRQVRGQAEFLPDGRSSPRLFCVRSLELHF 295 
WD40-rpts      6__________________)                                   

6 WD40-repeats found in QUERY=ENSMUSP00000102300 (Len=295):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-41       6.83  396.70  0.00028       15.0%     39.89
  WD 2:  Seg  4    45-87       6.66  389.81  0.00035       20.0%     44.50
  WD 3:  Seg  8    88-128      6.25  372.81  0.00059        7.5%     24.95
  WD 4:  Seg 12   132-172      6.99  403.49  0.00023       15.0%     48.43
  WD 5:  Seg 16   176-215      8.54  467.59  3.1e-05       30.0%     56.44
  WD 6:  Seg 20   219-260      7.11  408.19  0.00020       22.5%     57.25

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-41     AEAADAPPG-RVEA----ALSCFSFNQDCTSLAIGT-KAG--YKLFS
   WD 2   45-87     -VEQLDQVH-GSNEIPDVYIVERLFSSSLVVVVSHTKPRQ--MNVYH
   WD 3   88-128    FKKGTEICNYSYSS----NILSIRLNRQRLLVCLEESIYI--HNIKD
   WD 4  132-172    -LKTVLDIP-SNPT----GLCALSINHSNSYLAYPGSQSTGEIVLYD
   WD 5  176-215    -LKTVCTIA-AHEG----TLAAITFNSSGSKLASASEKGT-VIRVFS
   WD 6  219-260    -GQKLYEFR-RGMK-RYVTISSLVFSMDSQFLCASSNTET--VHIFK

   WD40 Template    TGECLRTLS-GHTS----GVTSVSFSPDGKRLVSGSEDGT--IKVWD