Input parameters:

  Query = ENSMUSP00000102000 (Len=435)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000102000, Len=435):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAATLLRATPRFSGLCASPTPFLQGRLRPLKAPASPFLCRGLAVEAKKTYVRDKPHVNVGTIGHVDHGKTTLTAAITKI 80  
WD40-rpts                                                                                      

Query       81 LAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQ 160 
WD40-rpts                                   (_____________________________WD 1_________________

Query      161 TREHLLLAKQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPVIVGSALCALEQRDPELGVKSVQKLL 240 
WD40-rpts      ____________)                                                                   

Query      241 DAVDTYIPVPTRDLDKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECELLGHNKNIRTVVTGIEMFHKSLERAEAGD 320 
WD40-rpts                                                                                      

Query      321 NLGALVRGLKREDLRRGLVMVKPGSIQPHQKVEAQVRAPVLSGFPCLEAGLVAKPFHPYCFSPLGLYPQQGGRWPPQTLC 400 
WD40-rpts                                                                                      

Query      401 ISFHARHVLPDLGHGLSSHLASREGTCHAWRGLEA 435 
WD40-rpts                                         

1 WD40-repeats found in QUERY=ENSMUSP00000102000 (Len=435):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   110-173      3.34  252.43  0.02441       20.0%      3.13

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  110-173    AAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLAKQIGV

   WD40 Template    TGECLR-TLSGHTSGVTSVSFS------------PDGKRLVSGSEDGTIK-----------VWD