Input parameters:

  Query = ENSMUSP00000101616 (Len=358)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000101616, Len=358):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIEQQKRKGPELPLVPVKRPRHELLLGAAGAGPGAGPQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGS 80  
WD40-rpts                     (_________________WD 1_________________) (_________________WD 2__

Query       81 TLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYP 160 
WD40-rpts      ______________)    (_________________WD 3________________)   (_________________W

Query      161 ARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240 
WD40-rpts      D 4_________________)(__________________WD 5_________________)   (______________

Query      241 GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRV 320 
WD40-rpts      ___WD 6________________)       (___________________WD 7__________________)   (__

Query      321 LYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ 358 
WD40-rpts      _______________WD 8________________)  

8 WD40-repeats found in QUERY=ENSMUSP00000101616 (Len=358):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    16-55       4.61  305.19  0.00479        7.5%      4.77
  WD 2:  Seg  2    57-95       9.27  497.49  1.2e-05       32.5%     51.06
  WD 3:  Seg  6   100-138      9.85  521.58  5.8e-06       37.5%     57.29
  WD 4:  Seg 10   142-181      9.39  502.63  1.0e-05       47.5%     55.61
  WD 5:  Seg 14   182-222      8.34  459.22  4.0e-05       30.0%     55.78
  WD 6:  Seg 18   226-264     10.30  539.98  3.3e-06       37.5%     52.24
  WD 7:  Seg 22   272-314      8.36  460.08  3.9e-05       32.5%     55.83
  WD 8:  Seg 26   318-356      9.47  505.95  9.4e-06       27.5%     53.28

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-55     PVK-RPRHELLLG----AAGAGPGAGPQQATP-GALLQAGPPRCSS
   WD 2   57-95     -QA-PIMLLSGHE----GEVYCCKFHPNGSTL-ASAGFDRLILLWN
   WD 3  100-138    -CD-NYATLKGHS----GAVMELHYNTDGSML-FSASTDKTVAVWD
   WD 4  142-181    -GE-RVKRLKGHT----SFVNSCYPARRGPQLVCTGSDDGTVKLWD
   WD 5  182-222    IRKKAAVQTFQNT----YQVLAVTFNDTSDQI-ISGGIDNDIKVWD
   WD 6  226-264    -NK-LTYTMRGHA----DSVTGLSLSSEGSYL-LSNAMDNTVRVWD
   WD 7  272-314    -ER-CVKIFQGNVHNFEKNLLRCSWSPDGSKI-AAGSADRFVYVWD
   WD 8  318-356    -RR-VLYKLPGHA----GSINEVAFHPDEPII-LSASSDKRLYMGE

   WD40 Template    TGE-CLRTLSGHT----SGVTSVSFSPDGKRL-VSGSEDGTIKVWD