Input parameters:

  Query = ENSMUSP00000101195 (Len=1155)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000101195, Len=1155):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRKFNIRKVLDGLTAGSSSASQQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSALAFDPVQKILAVGTQTG 80  
WD40-rpts        (____________________WD 1____________________)_________________WD 2___________

Query       81 ALRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTLHLWNLRQKRPAVLHSLKFCRERVTFCHLPFQSKWLYV 160 
WD40-rpts      _____)  (_________________WD 3________________)     (_________________WD 4______

Query      161 GTERGNIHIVNVESFTLSGYVIMWNKAIELSSKAHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKADYRYTYDEA 240 
WD40-rpts      __________)               (_________________WD 5________________)  (____________

Query      241 IHSVAWHHEGKQFICSHSDGTLTIWNVRSPAKPVQTITPHGKQLKDGKKPEPCKPILKVELKTTRSGEPFIILSGGLSYD 320 
WD40-rpts      _____WD 6________________)                                                      

Query      321 TVGRRPCLTVMHGKSTAVLEMDYSIVDFLTLCETPYPNDFQEPYAVVVLLEKDLVLIDLAQNGYPIFENPYPLSIHESPV 400 
WD40-rpts                          (_________________WD 7_________________)                    

Query      401 TCCEYFADCPVDLIPALYSVGARQKRQGYSKKEWPINGGNWGLGAQSYPEIIITGHADGSVKFWDASAITLQVLYKLKTS 480 
WD40-rpts                         (____________________WD 8____________________)               

Query      481 KVFEKSRNKDDRQNTDIVDEDPYAIQIISWCPESRMLCIAGVSAHVIIYRFSKQEVLTEVIPMLEVRLLYEINDVDTPEG 560 
WD40-rpts            (___________________WD 9___________________)                              

Query      561 EQPPPLSTPVGSSNPQPIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTELVIQLVWVGGEPPQQITSLALNS 640 
WD40-rpts                                                                      (______________W

Query      641 SYGLVVFGNCNGIAMVDYLQKAVLLNLSTIELYGSNDPYRREPRSPRKSRQPSGAGLCDITEGTVVPEDRCKSPTSGNLL 720 
WD40-rpts      D10______________) (_________________WD11_________________)                     

Query      721 GHCFLCTEIKCSSSPHNSDDEQKVNRWEPGRPPFNTVSHADCREICMALIVSQIPDNSFSRSRSSSVTSIDKESRETISA 800 
WD40-rpts                                                                                      

Query      801 LHFCETLTRKADSSPSPCLWVGTTVGTAFVITLNLPPGPEQRLLQPVIVSPSGTILRLKGAILRMAFLDATGCLMSPAYE 880 
WD40-rpts                                                                                      

Query      881 PWKEHNVAEEKDEKEKLKKRRPVSVSPSSSQEISENQYAVICSEKQAKVMSLPTQSCAYKQNITETSFVLRGDIVALSNS 960 
WD40-rpts                                                                                      

Query      961 VCLACFCANGHIMTFSLPSLRPLLDVYYLPLTNMRIARTFCFANNGQALYLVSPTEIQRLTYSQETCENLQEMLGELFTP 1040
WD40-rpts                                                                                      

Query     1041 VETPEAPNRGFFKGLFGGGAQSLDREELFGESSSGKASRSLAQHIPGPGGIEGVKGAASGVVGELARARLALDERGQKLS 1120
WD40-rpts                                                                                      

Query     1121 DLEERTAAMMSSADSFSKHAHEMMLKYKDKKWYQF 1155
WD40-rpts                                         

11 WD40-repeats found in QUERY=ENSMUSP00000101195 (Len=1155):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-48       4.57  303.35  0.00507       17.5%      3.12
  WD 2:  Seg  2    48-86       6.06  365.07  0.00075       20.0%     44.70
  WD 3:  Seg  5    89-127      6.49  382.55  0.00043       22.5%     56.44
  WD 4:  Seg  9   133-171      6.01  362.82  0.00080       25.0%     54.73
  WD 5:  Seg 14   187-225      5.71  350.69  0.00117       30.0%     46.15
  WD 6:  Seg 17   228-266      6.88  398.92  0.00026       20.0%     54.71
  WD 7:  Seg 26   341-380      4.94  318.52  0.00317        7.5%     15.47
  WD 8:  Seg 32   420-465      5.72  350.96  0.00116       20.0%     39.98
  WD 9:  Seg 38   487-530      4.58  304.04  0.00497       10.0%     39.72
  WD10:  Seg 44   625-658      3.53  260.46  0.01908       17.5%     44.76
  WD11:  Seg 47   660-699      3.37  253.89  0.02334       10.0%     -7.86

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-48     KFN------I--RKVLDG----LTAGSSSASQQQ-QQQQHPPGNREPEIQETLQSEHFQ
   WD 2   48-86     -QL------C--KTVRHG----FPYQPSALAFDP-VQKILAVGTQTG------ALRLFG
   WD 3   89-127    -GV------E--CYCQHD----SGAAVIQLQFLI-NEGALVSALADD------TLHLWN
   WD 4  133-171    -PA------V--LHSLKF----CRERVTFCHLPF-QSKWLYVGTERG------NIHIVN
   WD 5  187-225    ----------AIELSSKA----HPGPVVHISDNPMDEGKLLIGFESG------TVVLWD
   WD 6  228-266    -SK------K--ADYRYT----YDEAIHSVAWHH-EGKQFICSHSDG------TLTIWN
   WD 7  341-380    MDY------S--IVDFLT----LCETPYPNDFQE-PYAVVVLLEKDL------VLIDLA
   WD 8  420-465    VGARQKRQGY--SKKEWP----INGGNWGLGAQS-YPEIIITGHADG------SVKFWD
   WD 9  487-530    RNK------D--DRQNTDIVDEDPYAIQIISWCP-ESRMLCIAGVSA------HVIIYR
   WD10  625-658    VG--------------GE----PPQQITSLALNS-SYGLVVFGNCNG------IAMVDY
   WD11  660-699    QKA------V--LLNLST----IELYGSNDPYRR-EPRSPRKSRQPS------GAGLCD

   WD40 Template    TGE------C--LRTLSG----HTSGVTSVSFSP-DGKRLVSGSEDG------TIKVWD