Input parameters:

  Query = ENSMUSP00000101164 (Len=1005)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000101164, Len=1005):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPETPEKVDSAQEKVRGKTPTADDSDDSREKTGIEEKGELTDAYQLQVAEEMAKEIKKKIRKKLKEQLTYFPPDTLLHD 80  
WD40-rpts                                                                                      

Query       81 DKLASEKRKKKKKKVPVPTKPESSPSDVCDSAVEGEQKKEGTPEDSQHMEGICSREQDVDATVPENAKPKPKKTKKKTKA 160 
WD40-rpts                                                                                      

Query      161 VSNDNEDTNGDGVHEITSRDSPVHPKCLLDDDLVMGVYIHRTDRLKSDFMISHPMVKIHVVDEHTGQYVKKDDSERPVSS 240 
WD40-rpts                                                                                      

Query      241 YYEKDNVDYILPIMTQPYDFKKLKSRLPEWEEQVIFNENFPYLLREFEECPKVILFFEILDFLSMDEIKNNSEVQNQECG 320 
WD40-rpts                                                                                      

Query      321 FRKIAWAFLKLLGANGNANINSKLRLQLYYPPTKPRSQLNVVEVFEWWSKCPRNRYPSTLYVTVRGLKVPDCIKPSYRSM 400 
WD40-rpts                                                                                      

Query      401 MALQEERGTPVYCERHRETSSVDTEPGLEDSKEEVKWKRLPGQACRIPNKHLFSLNAGERGCFCLDFSHNGRILAAACAS 480 
WD40-rpts                                                      (__________________WD 1_________

Query      481 RDGYPIILYEIPSGRFMRELCGHLNIIYDLDWSKDDRYLVTSSSDGTARVWKNEINSTSTFRVLPHPSFVYTAKFHPATR 560 
WD40-rpts      _________)   (_________________WD 2________________)    (_________________WD 3__

Query      561 ELVVTGCYDSMIRIWKIDAREDAAILVRQLDVHKSFVNSICFDDEGHHMYSGDCIGVIVVWDTYVKVNDVQHSVRHWTIN 640 
WD40-rpts      _______________)       (_________________WD 4________________)                 (

Query      641 KEIKETEFRGVPISYLEVHPNGKRLLIHTKDSTLRIMDLRILAARKFVGAANYREKIHSTLTPCGTLLFSGSEDGIVYVW 720 
WD40-rpts      _________________WD 5________________)  (__________________WD 6_________________

Query      721 NPETGEQVAMYSDLPFKSTIRDISYHPLENMVAFCAFGQSEPILLYIYDFQVAQQEAEMLKRYSGTLPLPGIHQSEDALC 800 
WD40-rpts      )   (____________________WD 7___________________)           (__________________W

Query      801 TCPKLPQQGSFQIDEFVNTENSSSRKIQLVKQRLETVTEVIRSCAAKVNKNLSMTSPPPGPAKKPRVKQSFVLTTDEIIH 880 
WD40-rpts      D 8_________________)(____________________WD 9___________________)              

Query      881 QFGLPQTAFISIERGPFVRHVDPPPMVVALYDYTASRSDELTIHRGDIIRVYFKDNEDWWYGSVRKGQEGFFPANHVASE 960 
WD40-rpts                                                                                      

Query      961 TLYRDSPPKVKERSPPLTPKEKTKPEKPLASQKGGHEEETKSQTN 1005
WD40-rpts                                                   

9 WD40-repeats found in QUERY=ENSMUSP00000101164 (Len=1005):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 16   449-490      6.09  366.28  0.00072       20.0%     52.32
  WD 2:  Seg 20   494-532      9.90  523.61  5.4e-06       37.5%     55.54
  WD 3:  Seg 24   537-576      7.20  411.93  0.00017       27.5%     55.97
  WD 4:  Seg 28   584-622      8.83  479.46  2.1e-05       37.5%     51.62
  WD 5:  Seg 33   640-678      8.74  475.52  2.4e-05       20.0%     51.57
  WD 6:  Seg 37   681-721      7.06  406.13  0.00021       32.5%     53.69
  WD 7:  Seg 41   725-769      4.94  318.54  0.00317       17.5%     55.27
  WD 8:  Seg 45   781-821      6.44  380.86  0.00046       12.5%     37.03
  WD 9:  Seg 48   822-866      5.75  352.33  0.00111       12.5%     15.63

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  449-490    -N-K-----HLFSLN--AGERGCFCL--DFSHNGRIL-AAACASRDGYP----IILYE
   WD 2  494-532    -G-R-----FMRELC--GHLNIIYDL--DWSKDDRYL-VTSSSDG---T----ARVWK
   WD 3  537-576    -S-T-----STFRVL--PHPSFVYTA--KFHPATRELVVTGCYDS---M----IRIWK
   WD 4  584-622    -A-I-----LVRQLD--VHKSFVNSI--CFDDEGHHM-YSGDCIG---V----IVVWD
   WD 5  640-678    -N-K-----EIKETE--FRGVPISYL--EVHPNGKRL-LIHTKDS---T----LRIMD
   WD 6  681-721    -I-L-----AARKFV--GAANYREKIHSTLTPCGTLL-FSGSEDG---I----VYVWN
   WD 7  725-769    -G-E-----QVAMYSDLPFKSTIRDI--SYHPLENMV-AFCAFGQ---SEPILLYIYD
   WD 8  781-821    KRYS-----GTLPLP--GIHQSEDAL--CTCPKLPQQ-GSFQIDE---F----VNTEN
   WD 9  822-866    SS-SRKIQLVKQRLE--TVTEVIRSC--AAKVNKNLS-MTSPPPG---P----AKKPR

   WD40 Template    TG-E-----CLRTLS--GHTSGVTSV--SFSPDGKRL-VSGSEDG---T----IKVWD