Input parameters:

  Query = ENSMUSP00000101017 (Len=864)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000101017, Len=864):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAASDPGRWGECGPRPPGRLGARGGQPGTVLGAVGMMDLAYVCEWEKWAKSTYCPSLPLACAWSCRNLIAFTTDLRNDDQ 80  
WD40-rpts                                                                                      

Query       81 DLTHMIHILDTEHPWEVHSVSSGHSEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSQVEGDPIVALSW 160 
WD40-rpts                    (_________________WD 1________________)                           

Query      161 LHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALA 240 
WD40-rpts                                                                       (______________

Query      241 DIAFTGGGNIVVAAADGSSASPVKFYKVCVSVVSEKCRIDTEILPSLFMRCTTDPNRKDRFPAITHLKFLARDMSEQVLL 320 
WD40-rpts      ____WD 2__________________)                                                     

Query      321 CASSQTSSLVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQF 400 
WD40-rpts                                                                  (_________________WD

Query      401 YPGLGLALAFQDGSVHMVHRLSLQTMAVFYSSAPRSLDEPALKRPRTTCPAVHFKAMQLSWTSLALVGIDNHGKLSMLRI 480 
WD40-rpts       3________________)                                                             

Query      481 SPSLGHPLEPKLALQHLLFLLEYCMVTGYDWWDILLHVQPGMVQSLVERLHEEYTRQKPALQQVLSTRILAMKASLCKLS 560 
WD40-rpts                                                                                      

Query      561 PCTVARVCDYHTKLFLMAITSTLKSLLRPHFLNTPDKSPGDRLAEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQL 640 
WD40-rpts                                                                                      

Query      641 LQWVGDFVLYLLVSLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLW 720 
WD40-rpts                                                                                      

Query      721 ICCRDEGAASEPDEGLVDECCLLPSQLLVPNLDWLPASDGLVSRLQPKQPLRLRFGRAPTLPSSTSTLQLDGLTRAPGQP 800 
WD40-rpts                                                                                      

Query      801 KIDHLRRLHLGAYPTEECKACTRCGCVTMLKSPNKTTAVTQWEQRWIKNCLCGGLWRRVPLSCS 864 
WD40-rpts                                                                      

3 WD40-repeats found in QUERY=ENSMUSP00000101017 (Len=864):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    95-133      7.19  411.75  0.00018       35.0%     52.17
  WD 2:  Seg 15   226-267      3.26  249.37  0.02681       25.0%     32.18
  WD 3:  Seg 22   381-419      2.96  236.97  0.03916       17.5%     29.52

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   95-133    -WEVHSVSSGHSEAITCLEWDQSGSRLL---SADADGQIKCWS
   WD 2  226-267    STESLCRLRGRVA-LADIAFTGGGNIVVAAADGSSASPVKFYK
   WD 3  381-419    -PKLPISLTNTDLKVASDTQFYPGLGLA---LAFQDGSVHMVH

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLV---SGSEDGTIKVWD