Input parameters:

  Query = ENSMUSP00000099912 (Len=777)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000099912, Len=777):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPQSRHPVPHAGHLQTPHQAAGQPFKFTIPESLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLN 80  
WD40-rpts                                                                                      

Query       81 IEMHKQTEIAKRLNTICAQVIPFLSQEHQQQVAQAVERAKQVTMAELNAIIGQQQLQAQHLSHGHGPPVPLTPHPSGLQP 160 
WD40-rpts                                                                                      

Query      161 PGIPPLGGSASLLALSSALSGQSHLAIKDDKKHHDAERHRDREPGTSNSLLVPDSLRGTDKRRNGPEFSSDIKKRKVDDK 240 
WD40-rpts                                                                                      

Query      241 DNYDSDGDKSDDNLVVDVSNEDPSSPHASPTHSPRENGIDKNRLLKKDASGSPASTASSGSSSSLKSKEVSLHEKANTPV 320 
WD40-rpts                                                                                      

Query      321 LKSSTPTPRSDMPTPGTSATPGLRPGLGKPPAMEPLVNQAAGLRTPLAVPGPYPAPFGMVPHAGMNGELTSPGAAYAGLH 400 
WD40-rpts                                                                                      

Query      401 SMSPQMSAAAAAAAAAVVAYGRSPMVGFDPPPHMRVPSIPPNLAGIPGGKPAYSFHVTADGQMQPVPFPPDALIGPGIPR 480 
WD40-rpts                         (____________WD 1___________)                        (_______

Query      481 HARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 560 
WD40-rpts      _____________WD 2____________________)(_____________________WD 3________________

Query      561 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 640 
WD40-rpts      ____)     (_________________WD 4________________)   (_________________WD 5______

Query      641 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF 720 
WD40-rpts      __________)(__________________WD 6_________________)(__________________WD 7_____

Query      721 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 777 
WD40-rpts      ____________)(__________________WD 8_________________)   

8 WD40-repeats found in QUERY=ENSMUSP00000099912 (Len=777):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   420-448      2.81  230.65  0.04744       12.5%      8.76
  WD 2:  Seg  6   473-518      5.96  360.91  0.00085       25.0%     49.68
  WD 3:  Seg 10   519-565      7.45  422.27  0.00013       25.0%     47.56
  WD 4:  Seg 13   571-609      8.58  469.14  3.0e-05       30.0%     55.70
  WD 5:  Seg 17   613-651      9.86  521.99  5.7e-06       35.0%     53.41
  WD 6:  Seg 21   652-692      6.98  402.80  0.00023       25.0%     52.28
  WD 7:  Seg 25   693-733      8.30  457.52  4.2e-05       30.0%     53.80
  WD 8:  Seg 29   734-774      7.53  425.87  0.00011       32.5%     52.89

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  420-448    YGR--------------------------SPMVGFDPPPHMRVPSIPPNLAGIPG
   WD 2  473-518    LIG-------PGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWD
   WD 3  519-565    ISHPGNKSPVS-------QLDCL-NRDNYIRSCKLLPDGCTLIVGGEASTLSIWD
   WD 4  571-609    -PR-------I-------KAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWD
   WD 5  613-651    -QT-------L-------VRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWD
   WD 6  652-692    LRE-------G-------RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 7  693-733    VNK------PD-------KYQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 8  734-774    TPY------GA-------SIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------C-------LRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD