Input parameters:

  Query = ENSMUSP00000099653 (Len=325)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000099653, Len=325):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWD 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 CETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGEC 160 
WD40-rpts         (___________________WD 3__________________)         (_________________WD 4___

Query      161 VIAGHESGELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN 240 
WD40-rpts      _____________)   (_________________WD 5________________)   (________________WD 6

Query      241 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRIHYFDPQYFE 320 
WD40-rpts      ________________)                 (_________________WD 7________________)       

Query      321 FEFEA 325 
WD40-rpts           

7 WD40-repeats found in QUERY=ENSMUSP00000099653 (Len=325):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.74  475.65  2.4e-05       25.0%     52.02
  WD 2:  Seg  5    42-80      10.24  537.76  3.5e-06       40.0%     53.69
  WD 3:  Seg  9    84-126      5.63  347.19  0.00130       20.0%     56.38
  WD 4:  Seg 13   136-174      8.42  462.51  3.6e-05       22.5%     54.60
  WD 5:  Seg 17   178-216      9.63  512.59  7.7e-06       30.0%     56.27
  WD 6:  Seg 21   220-257      6.79  395.33  0.00029       22.5%     52.24
  WD 7:  Seg 26   275-313      9.94  525.41  5.2e-06       37.5%     54.48

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MKPIL--LQGHERSITQIKYNREGDLLFTVAKD-----PIVNVWY
   WD 2   42-80     -GERLGTYMGHTGAVWCVDADWDTKHVLTGSAD-----NSCRLWD
   WD 3   84-126    -GKQLALLKTN-SAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFD
   WD 4  136-174    -NEPYMKIPCNDSKITSAVWGPLGECVIAGHES-----GELNQYS
   WD 5  178-216    -GEVLVNVKEHSRQINDIQLSRDMTMFVTASKD-----NTAKLFD
   WD 6  220-257    -LEHQKTFRTERP-VNSAALSPNYDHVVLGGGQ-----EAMDVTT
   WD 7  275-313    -EEEFGRVKGHFGPINSVAFHPDGKSYSSGGED-----GYVRIHY

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSED-----GTIKVWD