Input parameters:

  Query = ENSMUSP00000099564 (Len=1509)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000099564, Len=1509):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMAGEGSTITSRIKNLLRSPSIKLRRSKAGNRREDLSSKVTLEKVLGVTVSGGRGLACDPRSGLVAYPAGCVVVLFNPRK 80  
WD40-rpts      (________________WD 1________________)________________WD 2__________________)   

Query       81 HKQHHILNSSRKTITALAFSPDGKYLVTGESGHMPAVRVWDVAERSQVAELQEHKYGVACVAFSPSAKYIVSVGYQHDMI 160 
WD40-rpts      (__________________WD 3_________________)   (__________________WD 4_____________

Query      161 VNVWAWKKNIVVASNKVSSRVTAVSFSEDCSYFVTAGNRHIKFWYLDDSKTSKVNATVPLLGRSGLLGELRNNLFTDVAC 240 
WD40-rpts      ____)(_________________WD 5_________________)                                   

Query      241 GRGEKADSTFCITSSGLLCEFSDRRLLDKWVELRNTDSFTTTVAHCISVTQEYIFCGCADGTVRLFNPSNLHFLSTLPRP 320 
WD40-rpts                           (____________________WD 6____________________)             

Query      321 HALGTDIASITEASRLFSGGVNARYPDTIALTFDPTNQWLSCVYNDHSIYVWDVRDPKKVGKVYSALYHSSCVWSVEVYP 400 
WD40-rpts               (___________________WD 7___________________)(_________________________W

Query      401 EIKDSHQACLPPSSFITCSSDNTIRLWNTESSGVHGSTLHRNILSNDLIKIIYVDGNTQALLDTELPGGDKADGSLMDPR 480 
WD40-rpts      D 8________________________)(_______________WD 9_______________)     (__________

Query      481 VGIRSVCISPNGQHLASGDRMGTLRIHELQSLSEMLKVEAHDSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSL 560 
WD40-rpts      _______WD10________________)   (__________________WD11__________________)     (_

Query      561 QQTLDEHSSSITAVKFAASDGQVRMISCGADKSIYFRTAQKSGEGVQFTRTHHVVRKTTLYDMDVEPSWKYTAIGCQDRN 640 
WD40-rpts      ________________WD12_________________)    (___________________WD13______________

Query      641 IRIFNISSGKQKKLFKGSQGEDGTLIKVQTDPSGIYIATSCSDKNLSIFDFSSGECVATMFGHSEIVTGMKFSNDCKHLI 720 
WD40-rpts      ____)(____________________WD14___________________)   (_________________WD15_____

Query      721 SVSGDSCIFVWRLSSEMTISMRQRLAELRQRQRGIKQQGPTSPQRASGAKQHHAPVVPPSGPALSSDSDKEGEDEGTEEE 800 
WD40-rpts      ___________)                                              (_____________________

Query      801 ELPALPILSKSTKKELASGSSPALLRSLSHWEMSRAQETMEYLDPAPVANTGPKRRGRWAQPGVELSVRSMLDLRQIETL 880 
WD40-rpts      __WD16______________________)        (_______________WD17_______________)     (_

Query      881 APSPRGPSQDSLAVSPAGPGKHGPQGPELSCVSQNERAPRLQTSQPCSCPHIIQLLSQEEGVFAQDLEPAPIEDGIVYPE 960 
WD40-rpts      ______________WD18_______________)                                              

Query      961 PSDSPTMDTSAFQVQAPTGGSLGRMYPGSRGSEKHSPDSACSVDYSSSRLSSPEHPNEDSESTEPLSVDGISSDLEEPAE 1040
WD40-rpts                                                                                      

Query     1041 GDEDEEEEGGTGLCGLQEGGPHTPDQEQFLKQHFETLANGTAPGGPARVLERTESQSISSRFLLQVQTSPLREPSLSSSG 1120
WD40-rpts                                                                                      

Query     1121 LALTSRPDQVSQVSGEQLKGSGATPPGAPPEMEPSSGNSGPKQVAPVLLTRRHNNLDNSWASKKMAATRPLAGLQKAQSV 1200
WD40-rpts                                                                                      

Query     1201 HSLVPQDEVPSSRPLLFQEAETQGSLGSLPQAGGCSSQPHSYQNHTTSSMAKLARSISVGENPGLATEPQAPVPIRISPF 1280
WD40-rpts                                                                                      

Query     1281 NKLALPSRAHLVLDIPKPLPDRPTLTTFSPVSKGLAHNETEQSGPLVSLGKAHTTVEKHSCLGEGTTHKSRTECQAYPGP 1360
WD40-rpts                                                                                      

Query     1361 NHPCAQQLPVNNLLQGPESLQPLSPEKTRNPVESSRPGVALSQDSELALSLQQCEQLVAELQGNVRQAVELYRAVTSYKT 1440
WD40-rpts                                                                                      

Query     1441 PSAEQSHITRLLRDTFSSVRQELEVLAGAVLSSPGGSPGAVGAEQTQALLEQYSELLLRAVERRMERRL 1509
WD40-rpts                                                                           

18 WD40-repeats found in QUERY=ENSMUSP00000099564 (Len=1509):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       4.15  285.97  0.00869       17.5%     29.96
  WD 2:  Seg  4    36-77       3.34  252.49  0.02437       10.0%     45.70
  WD 3:  Seg  8    81-121      6.95  401.56  0.00024       35.0%     56.81
  WD 4:  Seg 12   125-165      7.42  420.99  0.00013       35.0%     55.44
  WD 5:  Seg 16   166-205      5.42  338.45  0.00171       30.0%     53.61
  WD 6:  Seg 24   262-307      5.35  335.53  0.00187       25.0%     48.69
  WD 7:  Seg 30   330-373      6.25  372.87  0.00059       30.0%     51.56
  WD 8:  Seg 34   374-428      5.54  343.39  0.00147       30.0%     53.75
  WD 9:  Seg 38   429-464      3.81  272.05  0.01335       10.0%     29.55
  WD10:  Seg 41   470-508      7.64  430.36  9.9e-05       30.0%     47.71
  WD11:  Seg 44   512-553      6.56  385.44  0.00040       27.5%     56.47
  WD12:  Seg 48   559-598      6.40  379.10  0.00048       27.5%     47.98
  WD13:  Seg 51   603-645      5.45  339.79  0.00164       20.0%     57.85
  WD14:  Seg 55   646-690      6.68  390.57  0.00034       15.0%     52.97
  WD15:  Seg 59   694-732      9.48  506.18  9.4e-06       47.5%     58.33
  WD16:  Seg 66   779-829      3.96  278.22  0.01104       12.5%     34.86
  WD17:  Seg 69   838-873      4.39  295.89  0.00639       12.5%     43.76
  WD18:  Seg 72   879-914      3.14  244.55  0.03107       17.5%      4.12

Multiple sequence alignment of 18 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     -------------M-----MA---G----EGST----I----TSRIKNLL--RSPSI---K----------LRRSKA--GNR--REDLSS
   WD 2   36-77     LS-----------S-----KVTLEK----VLGV----T----VSGGRGLA--CDPRS---G----------LVAYPA---GC--VVVLFN
   WD 3   81-121    -H-----------K-----QH---H----ILNS----S----RKTITALA--FSPDG---K----------YLVTGE--SGHMPAVRVWD
   WD 4  125-165    -R-----------S-----QV---A----ELQE----H----KYGVACVA--FSPSA---K----------YIVSVGYQHDM--IVNVWA
   WD 5  166-205    WK-----------K----NIV---V----ASNK----V----SSRVTAVS--FSEDC---S----------YFVTAG---NR--HIKFWY
   WD 6  262-307    SD-----------R-----RL---LDKWVELRN----T----DSFTTTVAHCISVTQ---E----------YIFCGC--ADG--TVRLFN
   WD 7  330-373    IT-----------E-----AS---R----LFSGGVNAR----YPDTIALT--FDPTN---Q----------WLSCVY--NDH--SIYVWD
   WD 8  374-428    VR-----------DPKKVGKV---Y----SALY----H----SSCVWSVE--VYPEI---KDSHQACLPPSSFITCS--SDN--TIRLWN
   WD 9  429-464    --------------------T---E----SSGV----H----GSTLHRNI--LSNDL---I----------KIIYVD--GNT--QALLDT
   WD10  470-508    -D-----------K-----AD---G----SLMD----P----RVGIRSVC--ISPNG---Q----------HLASGD--RMG--TLRIHE
   WD11  512-553    -L-----------S-----EM---L----KVEA----H----DSEILCLE--YSKPDTGLK----------LLASAS--RDR--LIHVLD
   WD12  559-598    -------------S-----LQ---Q----TLDE----H----SSSITAVK--FAASD---G--------QVRMISCG--ADK--SIYFRT
   WD13  603-645    -G-----------E-----GV---Q----FTRT----HHVVRKTTLYDMD--VEPSW---K----------YTAIGC--QDR--NIRIFN
   WD14  646-690    IS------SGKQKK-----LF---K----GSQG----E----DGTLIKVQ--TDPSG---I----------YIATSC--SDK--NLSIFD
   WD15  694-732    -G-----------E-----CV---A----TMFG----H----SEIVTGMK--FSNDC---K----------HLISVS--GDS--CIFVWR
   WD16  779-829    PSGPALSSDSDKEG-----ED---E----GTEE----E----ELPALPIL--SKSTK---K----------ELASGS--SPA--LLRSLS
   WD17  838-873    --------------------E---T----MEYL----D----PAPVANTG--PKRRG---R----------WAQPGV--ELS--VRSMLD
   WD18  879-914    T------------------LA---P----SPRG----P----S--QDSLA--VSPAG---P----------GKHGPQ--GPE--LSCVSQ

   WD40 Template    TG-----------E-----CL---R----TLSG----H----TSGVTSVS--FSPDG---K----------RLVSGS--EDG--TIKVWD