Input parameters:

  Query = ENSMUSP00000099502 (Len=485)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000099502, Len=485):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAAVVEEAAAGDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEEPLPLAFYVHDAEIVSSLGKTLESQ 80  
WD40-rpts       (_________________WD 1_________________)                                       

Query       81 SVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVL 160 
WD40-rpts                            (_________________WD 2_________________)   (______________

Query      161 SISWSPDGKKLASGCKNGQVLLWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCER 240 
WD40-rpts      ___WD 3________________)(_____________________WD 4_____________________)   (____

Query      241 ILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEATVNAQDLQG 320 
WD40-rpts      ____________WD 5________________)   (_________________WD 6________________)   (_

Query      321 SLKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWD 400 
WD40-rpts      ________________WD 7________________)(___________________WD 8__________________)

Query      401 GRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLATDLPGHADEVYAVDWSPDGQRVASGGKDKCL 480 
WD40-rpts         (_________________WD 9________________)   (_________________WD10_____________

Query      481 RIWRR 485 
WD40-rpts      ___) 

10 WD40-repeats found in QUERY=ENSMUSP00000099502 (Len=485):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       8.07  448.11  5.7e-05       12.5%     40.85
  WD 2:  Seg 10   103-142     12.22  619.55  2.8e-07       50.0%     51.46
  WD 3:  Seg 14   146-184     10.16  534.37  3.9e-06       42.5%     51.84
  WD 4:  Seg 18   185-232      8.32  458.35  4.1e-05       37.5%     48.25
  WD 5:  Seg 21   236-273      9.21  495.17  1.3e-05       50.0%     55.01
  WD 6:  Seg 25   277-315      8.24  455.02  4.6e-05       27.5%     56.62
  WD 7:  Seg 29   319-357      8.62  470.94  2.8e-05       30.0%     44.68
  WD 8:  Seg 32   358-400      9.52  508.09  8.8e-06       40.0%     55.01
  WD 9:  Seg 36   404-442     10.58  551.57  2.3e-06       47.5%     58.26
  WD10:  Seg 40   446-484      9.68  514.54  7.2e-06       35.0%     48.91

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     AA---A---VVEEAAAGDVQRLLVQF-----QDEGGQLLGSPFDVPVDITP
   WD 2  103-142    VT---R---CTSSLEGHSEAVISVAF-----SPTGKYLASGSGDTTVRFWD
   WD 3  146-184    -E---T---PHFTCKGHRHWVLSISW-----SPDGKKLASGCKNGQVLLWD
   WD 4  185-232    PSTGLQ---VGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWD
   WD 5  236-273    -G---R---CERILTGHTQSVTCLRW-----GGDG-LLYSASQDRTIKVWR
   WD 6  277-315    -G---V---LCRTLQGHGHWVNTMAL-----STDYALRTGAFEPAEATVNA
   WD 7  319-357    -Q---G---SLKELKERASSRYNLVR-----GQGPERLVSGSDDFTLFLWS
   WD 8  358-400    PA---EDKKPLARMTGHQALINQVLF-----SPDSRIVASASFDKSIKLWD
   WD 9  404-442    -G---K---YLASLRGHVAAVYQIAW-----SADSRLLVSGSSDSTLKVWD
   WD10  446-484    -Q---K---LATDLPGHADEVYAVDW-----SPDGQRVASGGKDKCLRIWR

   WD40 Template    TG---E---CLRTLSGHTSGVTSVSF-----SPDGKRLVSGSEDGTIKVWD