Input parameters:

  Query = ENSMUSP00000099349 (Len=446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000099349, Len=446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEAEAADAPPGRVEAALSCFSFNQDCTSLAIGTKAGYKLFSLSSVEQLDQVHGSNEIPDVYIVERLFSSSLVVVVSHTKP 80  
WD40-rpts        (_________________WD 1________________)   (___________________WD 2____________

Query       81 RQMNVYHFKKGTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTVLDIPSNPTGLCALSINHSNSYLAYP 160 
WD40-rpts      ______)(__________________WD 3_________________)   (__________________WD 4______

Query      161 GSQSTGEIVLYDGNSLKTVCTIAAHEGTLAAITFNSSGSKLASASEKGTVIRVFSVPEGQKLYEFRRGMKRYVTISSLVF 240 
WD40-rpts      ___________)   (_________________WD 5_________________)(____________________WD 6

Query      241 SMDSQFLCASSNTETVHIFKMEHLTDSRPEEPSTWSGYMGKMFMAATNYLPAQVSDMMNQDRAFATGRLNFSGQKNICTL 320 
WD40-rpts      ___________________)    (_________________WD 7________________)(________________

Query      321 STIQKLPRLLVASSDGHLYIYNLDPQDGGECVLIKTHSLLSSGTTEENKENDLRPSLPPSYAATVARPSTSAASTVPGYS 400 
WD40-rpts      _WD 8________________) (____________________WD 9____________________)           

Query      401 EDGGALRGEVIPEHEFATGPVCLDDENEFPPIILCRGSQKGKTKQS 446 
WD40-rpts                                                    

9 WD40-repeats found in QUERY=ENSMUSP00000099349 (Len=446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-41       6.44  380.87  0.00046       15.0%     39.30
  WD 2:  Seg  4    45-87       6.24  372.28  0.00060       20.0%     45.35
  WD 3:  Seg  8    88-128      5.69  349.78  0.00120        7.5%     25.01
  WD 4:  Seg 12   132-172      6.45  381.23  0.00045       15.0%     46.94
  WD 5:  Seg 16   176-215      8.26  455.71  4.5e-05       30.0%     56.78
  WD 6:  Seg 20   216-260      7.17  410.75  0.00018       22.5%     46.38
  WD 7:  Seg 24   265-303      4.41  296.71  0.00623       12.5%      1.62
  WD 8:  Seg 26   304-342      7.08  407.14  0.00020       17.5%     53.19
  WD 9:  Seg 30   344-389      7.26  414.72  0.00016       20.0%     23.18

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-41     AEA------A-----DAPPG-RVEA----ALSCFSFNQDCTSLAIGT-KAG--YKLFS
   WD 2   45-87     -VE------Q-----LDQVH-GSNEIPDVYIVERLFSSSLVVVVSHTKPRQ--MNVYH
   WD 3   88-128    FKK------G-----TEICNYSYSS----NILSIRLNRQRLLVCLEESIYI--HNIKD
   WD 4  132-172    -LK------T-----VLDIP-SNPT----GLCALSINHSNSYLAYPGSQSTGEIVLYD
   WD 5  176-215    -LK------T-----VCTIA-AHEG----TLAAITFNSSGSKLASASEKGT-VIRVFS
   WD 6  216-260    VPE------GQKLYEFRRGM-KRYV----TISSLVFSMDSQFLCASSNTET--VHIFK
   WD 7  265-303    -TD------S-----RPEEP-STWS----GYMGKMFMAATNYLPAQVSDMM--NQDRA
   WD 8  304-342    -FA------T-----GRLNF-SGQK----NICTLSTIQKLPRLLVASSDGH--LYIYN
   WD 9  344-389    DPQDGGECVL-----IKTHS-LLSS----GTTEENKENDLRPSLPPSYAAT--VARPS

   WD40 Template    TGE------C-----LRTLS-GHTS----GVTSVSFSPDGKRLVSGSEDGT--IKVWD