Input parameters:

  Query = ENSMUSP00000098406 (Len=827)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000098406, Len=827):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGQPAASSGLGLPDYRSGVSFHDQADLPDTEDFQAGLYVAESPQPQEAEAVSLGQLSDKSSTSEASQGEERGGDDGGAP 80  
WD40-rpts                                                                                      

Query       81 ADKNSVKSGDSSQDLKQSEGSEEEEEEEGCVVLEEDQEDEVTGTSELTLSDTMLSMETVVAPGDGRDREEEEEPLTEQTE 160 
WD40-rpts                                                                                      

Query      161 GKEQKILLDTACKMVRWLSAKLGPTVASRHVARNLLRLLTSCYVGPTRQQFTVSSDDTPPLNAGNIYQKRPVLGDIVSGP 240 
WD40-rpts                                                                                      

Query      241 VLSCLLHIAYLYGEPVLTYQYLPYISYLVAPGSNSNPSRLNSRKEAGLLAAVTLTQKIIVYLSDTTLMDILPRISHEVLL 320 
WD40-rpts                                                                                      

Query      321 PVLGFLTSFVTGFPSGAQARTVLCVKTISLIALICLRIGQEMVQQHLSEPVATFFQVFSHLHELRQQDLPLDPKGCTEGQ 400 
WD40-rpts                                                                                      

Query      401 LPEATFSDGQRRPVDPTLLEELQKVFTLEMAYTIYVPFSCLLGDIIRKIIPNHELVGELAGLYLESMSPSSRNPASMEPT 480 
WD40-rpts                                                      (__________________WD 1_________

Query      481 MASAGPEWDPQSGSCLQDDGHSGTFGSVLVGNRIQIPDSQPQSPGPLGSLSGVGSSGGLSNRNEDNALKRELPRSAHGLS 560 
WD40-rpts      ________)  (___________________WD 2___________________)______________WD 3_______

Query      561 GNWLAYWQYEIGVSQQDAHFHFHQIRLQSFPGHTGAVKCVAALSSEDFFLSGSKDRTVRLWPLYNYGDGTNETASRLIYA 640 
WD40-rpts      _______)    (______________________WD 4______________________)          (_______

Query      641 QHRKSVFYVGQLEAPQYVVSCDGAVHVWDPFTGKTLRTVDPSDSRVPLTAVAVMPAPHTSITMASSDSTLRFVDCRKPGL 720 
WD40-rpts      _________WD 5_______________)   (__________________WD 6__________________)     (

Query      721 QAVEGSVLISSSSDHSLTVWKELEQKPTHHYKSASDPIHTFDLYGSEVVTGTVANKIGVCSLLEPPSQATTKLSSENFRG 800 
WD40-rpts      ________WD 7________)(_________________WD 8_________________)(__________________

Query      801 TLTSLALLPTKRHLLLGSDNGIIRLLA 827 
WD40-rpts      __WD 9____________________)

9 WD40-repeats found in QUERY=ENSMUSP00000098406 (Len=827):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   449-489      6.34  376.70  0.00052       22.5%     13.97
  WD 2:  Seg 15   492-535      4.31  292.68  0.00706       20.0%     33.54
  WD 3:  Seg 18   535-568      3.63  264.79  0.01670       12.5%     25.25
  WD 4:  Seg 21   573-622      8.83  479.32  2.2e-05       30.0%     46.10
  WD 5:  Seg 25   633-669      6.00  362.31  0.00081       25.0%     39.97
  WD 6:  Seg 28   673-714      6.56  385.58  0.00040       32.5%     52.41
  WD 7:  Seg 32   720-741      3.10  242.81  0.03277       17.5%     32.33
  WD 8:  Seg 34   742-781      5.99  362.25  0.00082       20.0%     38.82
  WD 9:  Seg 38   782-827      7.14  409.51  0.00019       22.5%     43.18

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  449-489    -II----------PNHELVGELAGL--YLESMS-----PSS-RNPASMEPTMASAGPEWD
   WD 2  492-535    -SG----------SCLQDDGHSGTF--GSVLVGNRIQIPDS-QPQSP--GPLGSLSGVGS
   WD 3  535-568    SSG----------GLSNRNEDNALK--REL--------PRS-AHGLS--GN---WLAYWQ
   WD 4  573-622    VSQQDAHFHFHQIRLQSFPGHTGAV--KCVAAL-----SSE-DFFLS--GSKDRTVRLWP
   WD 5  633-669    -TA----------SRLIYAQHRKSV--FYVGQL-----EAP-QYVVS--C--DGAVHVWD
   WD 6  673-714    -GK----------TLRTVDPSDSRVPLTAVAVM-----PAPHTSITM--ASSDSTLRFVD
   WD 7  720-741    ------------------------------LQA-----VEG-SVLIS--SSSDHSLTVWK
   WD 8  742-781    ELE----------QKPTHHYKSASD--PIHTFD-----LYG-SEVVT--GTVANKIGVCS
   WD 9  782-827    LLE----PPSQATTKLSSENFRGTL--TSLALL-----PTK-RHLLL--GSDNGIIRLLA

   WD40 Template    TGE----------CLRTLSGHTSGV--TSVSFS-----PDG-KRLVS--GSEDGTIKVWD