Input parameters:

  Query = ENSMUSP00000098401 (Len=351)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000098401, Len=351):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAAD 80  
WD40-rpts        (___________________WD 1__________________)   (_________________WD 2__________

Query       81 FTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSDDKQILS 160 
WD40-rpts      ______)   (________________WD 3________________)(__________________WD 4_________

Query      161 ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPEKEFLVA 240 
WD40-rpts      _________)   (________________WD 5_______________)   (________________WD 6______

Query      241 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPKI 320 
WD40-rpts      __________)   (_________________WD 7________________)               (___________

Query      321 GFPETAEEELAEEIASENSDSIYSSTPEVKA 351 
WD40-rpts      ______WD 8________________)    

8 WD40-repeats found in QUERY=ENSMUSP00000098401 (Len=351):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-45       8.52  466.64  3.2e-05       35.0%     50.78
  WD 2:  Seg  5    49-87       9.70  515.50  7.0e-06       30.0%     53.62
  WD 3:  Seg  9    91-128      8.38  460.79  3.8e-05       32.5%     56.90
  WD 4:  Seg 13   129-170      8.18  452.38  5.0e-05       32.5%     48.94
  WD 5:  Seg 17   174-210      5.28  332.89  0.00203       22.5%     54.88
  WD 6:  Seg 21   214-251      7.81  437.12  8.0e-05       25.0%     53.09
  WD 7:  Seg 25   255-293     10.68  555.82  2.0e-06       47.5%     53.55
  WD 8:  Seg 29   309-347      6.22  371.48  0.00061       12.5%     26.81

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-45     MRQ---TPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQ
   WD 2   49-87     -GD---WIGTFLGHKGAVWGATLN---KDATKAATAAADFTAKVWD
   WD 3   91-128    -GD---ELMTL-AHKHIVKTVDFT---QDSNYLLTGGQDKLLRIYD
   WD 4  129-170    LNKPEAEPKEISGHTSGIKKALWC---SDDKQILSAD-DKTVRLWD
   WD 5  174-210    -MT---EVKSLNFNMS-VSSMEYI---PEGEILVI-TYGRSIAFHS
   WD 6  214-251    -LE---PIKSFEAPAT-INSASLH---PEKEFLVAGGEDFKLYKYD
   WD 7  255-293    -GE---ELESYKGHFGPIHCVRFS---PDGELYASGSEDGTLRLWQ
   WD 8  309-347    -EE---DSGELAKPKIGFPETAEE---ELAEEIASENSDSIYSSTP

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFS---PDGKRLVSGSEDGTIKVWD