Input parameters:

  Query = ENSMUSP00000098328 (Len=336)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000098328, Len=336):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 TDPCRSNTSSVQSVSPEKKKLKFKAGGSRLKYFEKRKTDHVIIPDVEIKKKKYEKQEQNKNAGDTLKLCSILTESNERAS 80  
WD40-rpts      (________________________________WD 1________________________________)          

Query       81 VQEKTVPSPESSDPKGSSSKSTRVITVQEYLQRQKDKQITGNNASRNICVETVLCDSGHTKTSKHSAAVSWGKLVEGQSI 160 
WD40-rpts                                                                                      

Query      161 SAETAKELEHNSSSHGKDFKIHHSEASRTHSVSNNNKGKFDGKQPDKMFKNKTSMNNESNQMPLQVKEQRKQYLNRVAFK 240 
WD40-rpts                                                                                      

Query      241 CTERESICLTKLDSASKKLSIEKKSGEYTSKTKDTDKPSMLEFKLCPDVLLKNTSTVDKQDCPGPGPEKESTCASFRNKK 320 
WD40-rpts                                                                                      

Query      321 YKRRLVKMHPYKDKDA 336 
WD40-rpts                      

1 WD40-repeats found in QUERY=ENSMUSP00000098328 (Len=336):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-70       3.65  265.42  0.01638       37.5%     15.17

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-70     TDPCRS----NTSSVQSVSPEKKKLKFKAGGSRLKYFEKRKTDHVIIPDVEIKKKKYEKQEQNKNAGDTLKLCS

   WD40 Template    TGECLRTLSGHTSGVTSVS-------FSPDGKRLVS---------GSED------------------GTIKVWD