Input parameters:

  Query = ENSMUSP00000098076 (Len=803)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000098076, Len=803):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQDAENVAVPEAAEERAEPARQQPASESPPTDEAAGSGGSEVGQTEDAEEDAEAGPEPEVRAKPAAQSEEETATSPAASP 80  
WD40-rpts                                                                                      

Query       81 TPQSAERSPSQEPSAPGKAEAVGEQARGHPSAGAEEEGGSDGSAAEAEPRALENGEADEPSFSDPEDFVDDVSEEELLGD 160 
WD40-rpts                                                                                      

Query      161 VLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIINDYYPEEDGKTKGYIFLEYASPAHAVDAVKNAD 240 
WD40-rpts                                                                                      

Query      241 GYKLDKQHTFRVNLFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVKDPVSIEE 320 
WD40-rpts                                                                              (_______

Query      321 RARWTETYVRWSPKGTYLATFHQRGIALWGGDKFKQIQRFSHQGVQLIDFSPCERYLVTFSPLMDTQDDPQAIIIWDILT 400 
WD40-rpts      _________WD 1________________)(_____________________WD 2____________________)   

Query      401 GHKKRGFHCESSAHWPIFKWSHDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPA 480 
WD40-rpts                                                (___________________WD 3______________

Query      481 RVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKETIIAFAWE 560 
WD40-rpts      _____)                                                      (__________________W

Query      561 PNGSKFAVLHGEAPRISVSFYHVKSNGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEH 640 
WD40-rpts      D 4__________________)  (___________________WD 5___________________)(___________

Query      641 YMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIF 720 
WD40-rpts      _________WD 6____________________)                                              

Query      721 EQKDRLSQSKASKELVERRRTMMEDFRQYRKMAQELYMKQKNERLELRGGVDTDELDSNVDDWEEETIEFFVTEEVIPLG 800 
WD40-rpts                                                                                      

Query      801 SQE 803 
WD40-rpts         

6 WD40-repeats found in QUERY=ENSMUSP00000098076 (Len=803):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   313-350      3.62  264.23  0.01699       22.5%     52.69
  WD 2:  Seg 11   351-397      5.06  323.63  0.00271       27.5%     49.72
  WD 3:  Seg 19   443-486      3.48  258.57  0.02022       20.0%     37.65
  WD 4:  Seg 27   541-582      2.78  229.66  0.04888        5.0%     55.39
  WD 5:  Seg 31   585-628      3.94  277.59  0.01125       17.5%     44.98
  WD 6:  Seg 35   629-674      4.79  312.54  0.00382       20.0%     54.70

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  313-350    -KDPVSIEE-RARWTETYVRWSPKGTYLA-----TFH-------Q------RG----IALWG
   WD 2  351-397    GDKFKQIQR-FSHQGVQLIDFSPCERYLV-----TFSPLMDTQDD------PQ---AIIIWD
   WD 3  443-486    -MGLLDKKS-LKISGIKDFSWSPGGNIIAFWVPEDKD-------I------PA---RVTLMQ
   WD 4  541-582    -KQVPVDVV-EMKETIIAFAWEPNGSKFA-----VLH-------G------EAPRISVSFYH
   WD 5  585-628    SNGKIELIKMFDKQQANTIFWSPQGQFVV--LAGLRS-------M------NG---ALAFVD
   WD 6  629-674    TSDCTVMNI-AEHYMASDVEWDPTGRYVV-----TSV-------SWWSHKVDN---AYWLWT

   WD40 Template    TGECLRTLS-GHTSGVTSVSFSPDGKRLV-----SGS-------E------DG---TIKVWD