Input parameters:

  Query = ENSMUSP00000098075 (Len=731)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000098075, Len=731):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGACGKPHMSRHRCRGNDVWNLIRSCRYKSLLSSAILTPVSLTARRVCFQASKIWAVTRVRKTLKEWPDPAVTKTTIGQ 80  
WD40-rpts                                                                                      

Query       81 RRPEELAQAAPLCSRTEEAGALAQDEYEEDSSDEEDIRNTVGNVPLAWYDEFPHVGYDLDGKRIYKPLRTRDELDQFLDK 160 
WD40-rpts                                                                                      

Query      161 MDDPDFWRTVQDKMTGRDLRLTDEQVALVHRLQRGQFGDSGFNPYEPAVDFFSGDIMIHPVTNRPADKRSFIPSLVEKEK 240 
WD40-rpts                                                                                      

Query      241 VSRMVHAIKMGWIKPRRPHDPTPSFYDLWAQEDPNAVLGRHKMHVPAPKLALPGHAESYNPPPEYLPTEEERSAWMQQEP 320 
WD40-rpts                                                                                    (_

Query      321 VERKLNFLPQKFPSLRTVPAYSRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPVCQALVYRGHSDL 400 
WD40-rpts      ________________WD 1________________)           (__________________________WD 2_

Query      401 VRCLSVSPGGQWLASGSDDGTLKLWEVATARCMKTVHVGGVVRSIAWNPNPTICLVAAAMDDAVLLLNPALGDRLLVGST 480 
WD40-rpts      _________________________)   (_________________WD 3________________)(___________

Query      481 DQLLEAFTPPEEPALQPARWLEVSEEEHQRGLRLRICHSKPVTQVTWHGRGDYLAVVLSSQEHTQVLLHQVSRRRSQSPF 560 
WD40-rpts      _____WD 4_______________)   (__________________WD 5__________________)     (____

Query      561 RRSHGQVQCVAFHPSRPFLLVASQRSIRIYHLLRQELTKKLMPNCKWVSSMAVHPAGDNIICGSYDSKLVWFDLDLSTKP 640 
WD40-rpts      ___________WD 6_______________)   (_________________WD 7________________)    (__

Query      641 YKVLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHTLTRDLGVLDVAFHPTQPWVFS 720 
WD40-rpts      _______________WD 8________________)            (___________________WD 9________

Query      721 SGADGTIRLFS 731 
WD40-rpts      __________)

9 WD40-repeats found in QUERY=ENSMUSP00000098075 (Len=731):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   319-357      3.72  268.30  0.01499       12.5%     34.76
  WD 2:  Seg  8   369-426      8.38  460.62  3.9e-05       45.0%     50.44
  WD 3:  Seg 12   430-468      4.04  281.73  0.00990       20.0%     53.66
  WD 4:  Seg 16   469-505      4.00  280.09  0.01042       17.5%     30.86
  WD 5:  Seg 19   509-550      4.80  313.09  0.00375       25.0%     46.60
  WD 6:  Seg 23   556-591      4.10  284.08  0.00921       17.5%     48.77
  WD 7:  Seg 26   595-633      7.22  412.93  0.00017       25.0%     57.43
  WD 8:  Seg 30   638-676      7.69  432.12  9.3e-05       27.5%     52.73
  WD 9:  Seg 34   689-731      5.88  357.66  0.00094       35.0%     46.26

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  319-357    -EPVE------------------RKLNFLPQ----KFPSLRTVPAYSR-FI---QERFERCLDLYL
   WD 2  369-426    DPEDLIPKLPRPRDLQPFPVCQALVYRGHSD----LVRCLSVSPGGQW-LA---SGSDDGTLKLWE
   WD 3  430-468    -ARCM------------------KTVHVG-G----VVRSIAWNPNPTICLV---AAAMDDAVLLLN
   WD 4  469-505    PALGD------------------RLLVGSTD----QLLEAFTPPEEPA-LQ---PAR---WLEVSE
   WD 5  509-550    -QRGL------------------RLRICHSK----PVTQVTWHGRGDY-LAVVLSSQEHTQVLLHQ
   WD 6  556-591    ---SQ------------------SPFRRSHG----QVQCVAFHPSRPF-LL---VAS-QRSIRIYH
   WD 7  595-633    -QELT------------------KKLMPNCK----WVSSMAVHPAGDN-II---CGSYDSKLVWFD
   WD 8  638-676    -TKPY------------------KVLRHHKK----ALRAVAFHPRYPL-FA---SGSDDGSVIVCH
   WD 9  689-731    -LVPV------------------KVLKGHTLTRDLGVLDVAFHPTQPW-VF---SSGADGTIRLFS

   WD40 Template    TGECL------------------RTLSGHTS----GVTSVSFSPDGKR-LV---SGSEDGTIKVWD