Input parameters:

  Query = ENSMUSP00000097891 (Len=628)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000097891, Len=628):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLSAVEFSGGQLVGLARTAMSGTPDYQSLPGVGDEEAWVQSRHWWVSGPSGQNVTMDEGGLPLLPDSLVYQIFLSLGPAD 80  
WD40-rpts        (___________________WD 1__________________)                                   

Query       81 VLAAGLVCRQWQAVSRDEFLWKEQFYRYYQVARDVPRHPAATSWYEEFRRLYDMVPCVEVQTLKEHTDQVLHLSFSHSGY 160 
WD40-rpts                                                              (_________________WD 2__

Query      161 QFASCSKDCTVKIWNNDLTISLLHSADMRPYNWSYTQFSQFNQDDSLLLASGVFLGPHNSSSGEIAVISLDSFALLSRVR 240 
WD40-rpts      ______________)                                                                 

Query      241 NKPYDVFGCWLTETSLISGNLHRIGDITSCSVLWLNNAFQDVESENVNVVKRLFKIQNLNASTIRTVMVADCSRFDSPDL 320 
WD40-rpts                                                              (_________________WD 3__

Query      321 LLDASDQAGLPCRVFDLGGDTEEEATDPGLHTSGSDHVKKGLRRVFDSVLDGHGQLSDCALETKVAELLAQGHTKPPECN 400 
WD40-rpts      _______________)                                               (________________

Query      401 DADTRNKYLIFTTGCLTYSPHQIGIKQILPHQMTTAGPVLGEGRGSDAFFDALDHVIDVHGHIIGMGLSPDNRYLYVNSR 480 
WD40-rpts      _WD 4________________)(_________________WD 5________________)       (___________

Query      481 AWPPGSVVADPMQPPPIAEEIDLLVFDLKTMREVKRALRAHRAYTPNDECFFIFLDVSRDFVASGAEDRHGYIWDRHYNI 560 
WD40-rpts      ______WD 6________________)           (________________WD 7_______________)   (_

Query      561 CLAKLRHEDVVNSVAFSPQEQELLLTASDDATIKAWRSPRIVRVLQAPRPRPRPRPRPFFSWFASHRR 628 
WD40-rpts      ________________WD 8________________)                               

8 WD40-repeats found in QUERY=ENSMUSP00000097891 (Len=628):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-45       3.62  264.39  0.01690       15.0%      7.59
  WD 2:  Seg  5   137-175      9.57  510.18  8.3e-06       37.5%     53.48
  WD 3:  Seg 19   297-336      6.88  398.69  0.00026       20.0%      9.27
  WD 4:  Seg 22   384-422      4.47  299.47  0.00572       15.0%     23.78
  WD 5:  Seg 25   423-461      5.14  327.17  0.00242       15.0%     13.22
  WD 6:  Seg 28   469-507      5.47  340.75  0.00159       17.5%      1.34
  WD 7:  Seg 30   519-555      6.46  381.50  0.00045       15.0%     45.31
  WD 8:  Seg 33   559-597      7.39  419.83  0.00014       42.5%     52.84

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-45     SAVEFSGGQLVGLARTAMSGTP-DYQSLPGVGDEEAWVQSRHWW
   WD 2  137-175    -CVEVQTLKEHTDQVLHLSFSH-SGYQFASCSKDCT---VKIWN
   WD 3  297-336    QNLNASTIRTVMVADCSRFDSP-DLLLDASDQAGLP---CRVFD
   WD 4  384-422    -KVAELLAQGHTKPPECNDADT-RNKYLIFTTGCLT---YSPHQ
   WD 5  423-461    -IGIKQILPHQMTTAGPVLGEG-RGSDAFFDALDHV---IDVHG
   WD 6  469-507    SPDN-RYLYVNSRAWPPGSVVA-DPMQPPPIAEEID---LLVFD
   WD 7  519-555    RA---HRAYTPNDECFFIFLDV-SRDFVASGAEDRH---GYIWD
   WD 8  559-597    -NICLAKL-RHEDVVNSVAFSPQEQELLLTASDDAT---IKAWR

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGT---IKVWD