Input parameters:

  Query = ENSMUSP00000097669 (Len=357)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000097669, Len=357):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAALFPPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIWSLQTRRIVTTLNGHGGQGVIWLKTLPQGH 80  
WD40-rpts             (____________________WD 1___________________)   (__________________WD 2__

Query       81 QLLRVETCGCACGTWRRAGTPSWTQFSWTVWASAGAPSWSGDSSAGCLLCQGRAATRISHHPVGRVRAQGVGSDEQPKGR 160 
WD40-rpts      _______________)                        (_________________WD 3_________________)

Query      161 DYALIQTLRVQILEMPSKTSVCTLKPEADARPGMPMCLGLWQTNSSLRPLLLAGYEDGSVTLWDISERKVCSQITCHEEP 240 
WD40-rpts                       (_____________________WD 4____________________)   (____________

Query      241 VMGLDFDSQKAKGISGSAGKVLAVWSLDDQQSLQVKKTHELTNPGIAEVTIRPDHKILATAGWDHRIRVFHWRTMKPLAV 320 
WD40-rpts      _____WD 5________________)   (__________________WD 6__________________)   (_____

Query      321 LAFHSAPVYCVAFAADGLLAAGSKDQRISIWSLYPCP 357 
WD40-rpts      ___________WD 7________________)     

7 WD40-repeats found in QUERY=ENSMUSP00000097669 (Len=357):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-52       7.94  442.77  6.7e-05       30.0%     55.10
  WD 2:  Seg  5    56-96       5.24  331.22  0.00214       25.0%     48.18
  WD 3:  Seg 11   121-160      6.57  385.92  0.00039       15.0%     33.55
  WD 4:  Seg 15   178-224      7.46  422.74  0.00012       25.0%     46.46
  WD 5:  Seg 19   228-266      9.20  494.64  1.3e-05       20.0%     56.23
  WD 6:  Seg 23   270-311      8.12  450.23  5.3e-05       27.5%     57.47
  WD 7:  Seg 27   315-352      8.53  467.01  3.2e-05       35.0%     50.53

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-52     PPGPRFVLRGT---QS-AVNTLHF--------CPPSQAAGNPLLF-SGSQNGLVHIWS
   WD 2   56-96     -RRIVTTLNGH---GGQGVIWLKT--------LPQGH-----QLLRVETCGCACGTWR
   WD 3  121-160    GDSSAGCLLCQ---GR-AATRISH--------HPVGR-----VRA-QGVGSDEQPKGR
   WD 4  178-224    -KTSVCTLKPE---AD-ARPGMPMCLGLWQTNSSLRP-----LLL-AGYEDGSVTLWD
   WD 5  228-266    -RKVCSQITCH---EE-PVMGLDF--------DSQKA-----KGI-SGSAGKVLAVWS
   WD 6  270-311    -QQSLQVKKTHELTNP-GIAEVTI--------RPDHK-----ILA-TAGWDHRIRVFH
   WD 7  315-352    -MKPLAVLAFH---SA-PVYCVAF--------AADG------LLA-AGSKDQRISIWS

   WD40 Template    TGECLRTLSGH---TS-GVTSVSF--------SPDGK-----RLV-SGSEDGTIKVWD