Input parameters:

  Query = ENSMUSP00000097331 (Len=1184)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000097331, Len=1184):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 EPPVEVKEEPEADVKKVLSETFYYDYPELVSIPYVSSEERIPLYFLTLNHSFGYDCRKRANLQLLDSNTLLYVAGNQMVL 80  
WD40-rpts                                                                                      

Query       81 LDFKDKTQIYLQSSSGQGIGAIGVHPKKTYFAVAEKGSFPKIIIYEYPSLKPYRILRDGAEKAYAYVDFNNEGNLLASVG 160 
WD40-rpts           (_________________WD 1________________)  (____________________WD 2_________

Query      161 CHPDYTITIWGWKEEQPILRTKAFSQDVFKVTFNPDNDEQLTTSGSGHIKFWEMAFTFTGLKLQGSLGRFGKTSTSDIEG 240 
WD40-rpts      __________)   (_________________WD 3________________)           (_______________

Query      241 YAELPDGKVLSGSEWGNLLLWEGSLIKVELCRTGMKSCHSGSINQIMLDEGEVITAGSDGSVRIWDFETIDTADVIDDTG 320 
WD40-rpts      _WD 4________________)          (______________WD 5______________)              

Query      321 LLEIEPINELHIDKSVNLFSMIKMNEVGNNFWLAQDANGAIWKLDLSFSNITQDPECLFSFHSGPIAALAVSPLTYLMAT 400 
WD40-rpts          (_________________WD 6________________)         (_________________WD 7______

Query      401 TAMDCSVRVYDFSSKNPLVHMKFKQGGTSLIWAPRSVSVSASQIVVGFQDGVVRVLELFDPKGLTVYAGRKKIPDAELHL 480 
WD40-rpts      __________)   (___________________WD 8__________________)                    (__

Query      481 KYVFKPHTDEVTALAYERDGDILATGSEDKTVFFFDVEKEYKPIGFFNTPGPICQLMWSPASHPEKTLLIICENGYILES 560 
WD40-rpts      _______________WD 9________________)   (___________________WD10_________________

Query      561 LCPTIKDVDDQNVITFAIPNVFLRCFHFTSVKSKILRFLEVQRREQQKMLKEKEKLERRMKLAEEREAFGEEEIPEEETS 640 
WD40-rpts      _)(________________WD11________________)   (_________________WD12_______________

Query      641 EEGEEEEPPLPEIFMPPTPSPILCGFYSEPGKFWVSLGNYDAGFLYHCQFPSYLHNSDFQKQENEPFDFRVLENTEDNPI 720 
WD40-rpts      _)                                                                      (_______

Query      721 RNITFSNDQTMMFCGMTNGAIRVYVLSENDPFLVSLQHYWHFNVHDNNYGSIKSITSSFDDQYLLTAGEDGNIFVFDIFS 800 
WD40-rpts      _______WD13_____________)(_______________________WD14_______________________)   

Query      801 EFIVPKGIKAKVPIENARKKREHDKLMKKVEELKAHKREQIKILRNEFWKLLELNKELPAHMQFQRTDFNIDAKIHAEIH 880 
WD40-rpts                                                                                      

Query      881 KKTSLKIEQVEKELAWEKQKHELGLKKLQDRFREPLESDTIVVYATQSDHQIASYRLVKPSKYSKLKRPSQSERRQSKME 960 
WD40-rpts                                                                                      

Query      961 RLEKEGPGKKESQRDTGGHALEVLKSGSISLQEESVLEKGKKFRPRTLSEIMVENQIEKTKKLIQQAERAQFKILQRKKE 1040
WD40-rpts                                                                                      

Query     1041 WEELYKSKPDDDYEDPKDVQAIKEAQTYMGDFNLKTAPDYKIPEHMRINAAKKEEELGYLDTMAHGKKRYMNKCILSLRD 1120
WD40-rpts                                                                                      

Query     1121 LKLAVIEEIQCLVQELKNIQSSIPASKHMPIPQVPQIYPEEVPERRFQYDEETLLRFQRKQKKR 1184
WD40-rpts                                                                      

14 WD40-repeats found in QUERY=ENSMUSP00000097331 (Len=1184):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    86-124      4.66  307.03  0.00453       10.0%     54.03
  WD 2:  Seg  9   127-171      5.30  333.70  0.00198       25.0%     45.28
  WD 3:  Seg 13   175-213      7.35  418.30  0.00014       25.0%     56.30
  WD 4:  Seg 18   225-262      5.97  361.39  0.00084       37.5%     44.28
  WD 5:  Seg 22   273-306      5.37  336.49  0.00182       22.5%     45.92
  WD 6:  Seg 27   325-363      5.32  334.58  0.00193        7.5%     50.79
  WD 7:  Seg 31   373-411      6.95  401.79  0.00024       17.5%     53.66
  WD 8:  Seg 35   415-457      5.36  335.88  0.00185       22.5%     55.21
  WD 9:  Seg 40   478-516      7.89  440.39  7.2e-05       32.5%     53.05
  WD10:  Seg 44   520-562      2.85  232.34  0.04507        7.5%     45.15
  WD11:  Seg 48   563-600      4.35  294.43  0.00669        0.0%     35.19
  WD12:  Seg 52   604-642      3.85  273.58  0.01273        5.0%     44.63
  WD13:  Seg 61   713-745      5.39  337.22  0.00178       17.5%     48.19
  WD14:  Seg 64   746-797      6.46  381.60  0.00045       27.5%     55.64

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   86-124    -KT------------QIYLQSSSGQGIGAI----GVHPKK----TYFAV--AEKGSFPKIII
   WD 2  127-171    YPS---------LKPYRILRDGAEKAYAYV----DFNNEG----NLLASVGCHPDYTITIWG
   WD 3  175-213    -EQ------------PILRTKAFSQDVFKV----TFNPDN----DEQLT--TSGSGHIKFWE
   WD 4  225-262    -GS------------LGRFGKTSTSDIEGY----AELPDG----KVL-S--GSEWGNLLLWE
   WD 5  273-306    TG----------------MKSCHSGSINQI----ML--DE----GEVIT--AGSDGSVRIWD
   WD 6  325-363    EPI------------NELHIDKSVNLFSMI----KMNEVG----NNFWL--AQ-DANGAIWK
   WD 7  373-411    -QD------------PECLFSFHSGPIAAL----AVSPLT----YLMAT--TAMDCSVRVYD
   WD 8  415-457    -KN------------PLVHMKFKQGGTSLIWAPRSVSVSA----SQIVV--GFQDGVVRVLE
   WD 9  478-516    -LH------------LKYVFKPHTDEVTAL----AYERDG----DILAT--GSEDKTVFFFD
   WD10  520-562    -EY------------KPIGFFNTPGPICQL----MWSPASHPEKTLLII--CENGYILESLC
   WD11  563-600    --P------------TIKDVDDQNVITFAI----PNVFLR----CFHFT--SVKSKILRFLE
   WD12  604-642    -RE------------QQKMLKEKEKLERRM----KLAEER----EAFGE--EEIPEEETSEE
   WD13  713-745    -------------------ENTEDNPIRNI----TFSNDQ----TMMFC--GMTNGAIRVYV
   WD14  746-797    LSENDPFLVSLQHYWHFNVHDNNYGSIKSI----TSSFDD----QYLLT--AGEDGNIFVFD

   WD40 Template    TGE------------CLRTLSGHTSGVTSV----SFSPDG----KRLVS--GSEDGTIKVWD