Input parameters:

  Query = ENSMUSP00000097309 (Len=243)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000097309, Len=243):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPKKCPETQKSPDVAVLLRSKSRRGPQELEPEAKKLRVQGPVSSRTCESCCLLAELSSLQIPSRSSSIVRDLYQHKLGK 80  
WD40-rpts                                                                                      

Query       81 ATWSSLQQGLQKSFLHSLASYQVFRKAAPFDRRTTSLAWHPTHPSTLAVGSKGGDIMIWNFGIKDKPIFLKGATWHSRHN 160 
WD40-rpts                                (______________WD 1______________)   (________________

Query      161 LIVVGRYPDPNLKSCVPYELRTIDVFDGSSGKMMCQLYDPGYSGITSLNEFNPMGDTLASTMGYHILIWSQEEDGSQKDH 240 
WD40-rpts      ___WD 2___________________)   (_________________WD 3_________________)          

Query      241 ERL 243 
WD40-rpts         

3 WD40-repeats found in QUERY=ENSMUSP00000097309 (Len=243):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   107-140      6.43  380.21  0.00047       22.5%     36.01
  WD 2:  Seg  6   144-187      5.08  324.51  0.00263       25.0%     25.14
  WD 3:  Seg  7   191-230      3.28  250.11  0.02622       25.0%     32.35

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  107-140    ------A--APFD----RRTTSLAWHPTHPSTLAVGSKG-GDIMIWN
   WD 2  144-187    KDKPIFL--KGATWHSRHNLIVVGRYP-DPNLKSCVPYELRTIDVFD
   WD 3  191-230    GKMMCQLYDPGYS----GITSLNEFNP-MGDTLASTM-G-YHILIWS

   WD40 Template    GECLRTL--SGHT----SGVTSVSFSP-DGKRLVSGSED-GTIKVWD