Input parameters:

  Query = ENSMUSP00000097299 (Len=1209)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000097299, Len=1209):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVVPEKNAVRILWGRERGTRAMGAQRLLQELVEDKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYIT 80  
WD40-rpts                                            (___________________WD 1__________________

Query       81 EVKTGKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEI 160 
WD40-rpts      )   (_________________WD 2_________________)  (________________WD 3_____________

Query      161 HFWDWSRREPFAVVKTASEMERVRLVRFDPLGHYLLTAIVNPSNQQGDDEPEIPIDGTELSHYRQRALLQSQPVRRTPLL 240 
WD40-rpts      ___)(___________________WD 4___________________)                                

Query      241 HNFLHMLSSRSSGIQTEPFHPPEQASSTQQDQGLLNRPSAFSTVQSSTAGNTLRNLSLGPTRRSLGGPLSSHPSRYHREL 320 
WD40-rpts        (________________WD 5_______________)                                         

Query      321 APGLTGSEWTRTVLTLNSRSEVESMPPPRTSASSVSLLSVLRQQEGGSQASVYTSATEGRGFPSSGLATESDGGNGSSQN 400 
WD40-rpts                                                (_____________________WD 6____________

Query      401 NSGSIRHELQCDLRRFFLEYDRLQELDQSLSGETPQTQQAQEMLNNNIESERPGPSHLPTPHSSENNSNLSRGHLNRCRA 480 
WD40-rpts      ________)                                                                       

Query      481 CHNLLTFNNDTLRWERTTPNYSSGEASSSWHVSTTFEGMPPSGNQLPPLERTEGQMPSSSRLELSSSASSQEERTVGVAF 560 
WD40-rpts                                                                                      

Query      561 NQETGHWERIYTQSSRSGTVSQEALHQDMPEESSEEDSLRRRLLESSLISLSRYDGAGSREHPIYPDPARLSPAAYYAQR 640 
WD40-rpts                                                                                      

Query      641 MIQYLSRRDSIRQRSMRYQQNRLRSSTSSSSSDNQGPSVEGTDLEFEDFEDNGDRSRHRAPRNARMSAPSLGRFVPRRFL 720 
WD40-rpts                                                                                      

Query      721 LPEYLPYAGIFHERGQPGLATHSSVNRVLAGAVIGDGQSAVASNIANTTYRLQWWDFTKFDLPEISNASVNVLVQNCKIY 800 
WD40-rpts                                                                                      

Query      801 NDASCDISADGQLLAAFIPSSQRGFPDEGILAVYSLAPHNLGEMLYTKRFGPNAISVSLSPMGRYVMVGLASRRILLHPS 880 
WD40-rpts                                               (________________WD 7________________) 

Query      881 TEHMVAQVFRLQQAHGGETSMRRVFNVLYPMPADQRRHVSINSARWLPEPGLGLAYGTNKGDLVICRPEALNSGIEYYWD 960 
WD40-rpts                                                                                      

Query      961 QLSETVFTVHSSSRSSERPGTSRATWRTDRDMGLMNAIGLQPRNPTTSVTSQGTQTLALQLQNAETQTEREEEEPGAASS 1040
WD40-rpts                                                                                      

Query     1041 GPGEGEGSEYGGSGEDALSRIQRLMAEGGMTAVVQREQSTTMASMGGFGNNIIVSHRIHRSSQTGTESGAARTSSPQPST 1120
WD40-rpts                                                                                      

Query     1121 SRGLPSEPGQLAERALSPRTASWDQPSTSGRELPQPALSSSSPVPIPVPLASNEGPTMHCNVTNNSHLPEGDGSNRGEAA 1200
WD40-rpts                                                                                      

Query     1201 GPSGEPQNR 1209
WD40-rpts               

7 WD40-repeats found in QUERY=ENSMUSP00000097299 (Len=1209):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    39-81       5.84  356.09  0.00099       20.0%     49.31
  WD 2:  Seg  8    85-124      8.72  474.70  2.5e-05       35.0%     51.65
  WD 3:  Seg 12   127-164      5.57  344.76  0.00140       20.0%     49.22
  WD 4:  Seg 16   165-208      5.64  347.59  0.00129       17.5%     51.81
  WD 5:  Seg 23   243-279      4.96  319.40  0.00309       20.0%     25.57
  WD 6:  Seg 29   363-409      3.44  256.68  0.02143       17.5%      9.80
  WD 7:  Seg 38   842-879      2.86  232.98  0.04420       30.0%     38.92

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   39-81     WMK----WEGKRVELPDSPRSTFLLAFSPD-RTLLASTHVNHNIYITE
   WD 2   85-124    -GK-------CVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWD
   WD 3  127-164    -GG-------SESWFTDSNNAIASLAFHPT-AQLLLIATAN-EIHFWD
   WD 4  165-208    WSR---REPFAVVKTASEMERVRLVRFDPL-GHYLLTAIVNPSNQQGD
   WD 5  243-279    ----------FLHMLSSRSSGIQTEPFHPP-EQASSTQQDQGLLNRPS
   WD 6  363-409    QQEGGSQASVYTSATEGRGFPSSGLATESD-GGNGSSQNNSGSIRHEL
   WD 7  842-879    -GE-------MLYTKRFGPNAI-SVSLSPM-GRYVMVGLASRRILLHP

   WD40 Template    TGE-------CLRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD