Input parameters:

  Query = ENSMUSP00000096951 (Len=348)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000096951, Len=348):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQDPERDDVTASATASASASAPASASAHYSGSSLSVRWVQGFPSQNVHFVNDQTICYPSGNFVIFINLETKKKTVLQCI 80  
WD40-rpts      (_______________WD 1_______________)                                  (_________

Query       81 NGIVGVMATNVPSEVVAFSDRRFKPVIYIYSFPSLTRKNKLKGDILLDYTLLCFSYCGTYLASYSSLPEFELALWNWEAS 160 
WD40-rpts      _________WD 2_________________)   (__________________WD 3__________________)   (

Query      161 AILCKKSNPGMDVSQMSFNPMNWHQMCLSSSSAMSVWTIERSNQEHHFRIRSVKLPLEDATFLNEPDMLFPTTLPKDLIY 240 
WD40-rpts      _________________WD 4________________)  (__________________WD 5_________________

Query      241 GPVLPLSAIAGLVGEEAETFRPKDDIYPLLHPTMHCWTPSSDLYVGCEEGHLLMINTETLKVTVLQKAEEFPLPDGAPLI 320 
WD40-rpts      _)          (___________________WD 6___________________)                        

Query      321 NPLTLVYQKDGILASGIVMYSTSQNPSL 348 
WD40-rpts                                  

6 WD40-repeats found in QUERY=ENSMUSP00000096951 (Len=348):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       3.20  246.73  0.02907       10.0%     -2.26
  WD 2:  Seg  6    71-111      4.95  319.18  0.00311        7.5%     53.57
  WD 3:  Seg 10   115-156      4.93  318.48  0.00317       22.5%     49.23
  WD 4:  Seg 14   160-198      7.53  425.72  0.00011       22.5%     58.04
  WD 5:  Seg 18   201-242      5.73  351.27  0.00115        5.0%     32.84
  WD 6:  Seg 23   253-296      2.99  238.16  0.03777       22.5%     36.72

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     ----MSQDPERDD-----VT--ASATASASASAPAS--A--SAHYSGSSLS
   WD 2   71-111    -TKKKTVLQCING-----IV--GVMATNVPSEVVAF--SDRRFKPVIYIYS
   WD 3  115-156    -LTRKNKLKGDIL----LDY--TLLCFSYCGTYLASYSS--LPEFELALWN
   WD 4  160-198    -SAILCKKSNPGM-----DV--SQMSFNPMNWHQMC--L--SSSSAMSVWT
   WD 5  201-242    RSNQEHHFRIRSV-----KLPLEDATFLNEPDMLFP--T--TLPKDLIYGP
   WD 6  253-296    VGEEAETFRPKDDIYPLLHP--TMHCWTPSSD-LYV--G--CEEGHLLMIN

   WD40 Template    TGECLRTLSGHTS-----GV--TSVSFSPDGKRLVS--G--SEDGTIKVWD