WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000096218 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000096218 (Len=4858) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000096218, Len=4858): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MATMVPPVKLKWLEHLNSSWITEDSESIATREGVTVLYSKLISNKEVVPLPQQVLCLKGPQLPDFERESLSSDEQDHYLD 80
WD40-rpts
Query 81 ALLSSQLALAKMVCSDSPFAGALRKRLLVLQRVFYALSNKYHDKGKVKQQQHSPESSSGSADVHSVSERPRSSTDALIEM 160
WD40-rpts
Query 161 GVRTGLSLLFALLRQSWMMPVSGPGLSLCNDVIHTAIEVVSSLPPLSLANESKIPPMGLDCLSQVTTFLKGVTIPNSGAD 240
WD40-rpts
Query 241 TLGRRLASELLLGLAAQRGSLRYLLEWIEMALGASAVVYTMEKNKLLSSQEGMISFDCFMAILMQMRRSLGSSADRSQWR 320
WD40-rpts
Query 321 EPTRTSEGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQTGDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAP 400
WD40-rpts
Query 401 SFSDAQTIEAGQYCTFVISTDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVF 480
WD40-rpts
Query 481 SWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDI 560
WD40-rpts
Query 561 SNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640
WD40-rpts
Query 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAI 720
WD40-rpts
Query 721 QQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERYCDKINSEIPPLPFPSSREHHNFLKLCLKLLSN 800
WD40-rpts
Query 801 HLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQEVVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSK 880
WD40-rpts
Query 881 GQRMQLDIILTSLQDHTHVASLLGYSSPSDAADLSTVCMGYGNLSDQPYGSQICHPDTHLAEILMKTLLRNLGFYTDQAF 960
WD40-rpts
Query 961 GELEKNSDKYLLGTSSSENSQPAHLHELLCSLQKQLLAFCHINNVTENSSSVALLHKHLQLLLPHATDIYSRSANLLKES 1040
WD40-rpts
Query 1041 PWNGSVGEKLRDVIYVSAAGSMLCQIVNSLLLLPVSVARPLLSYLLDLLPPLDCLNRLLPAAALLEDQELQWPLHGGPEV 1120
WD40-rpts
Query 1121 IDPAGVPLPQPAQSWVWLVDLERTIALLIGRCLGGMLQGSPVSPEEQDTAYWMKTPLFSDGVEMDTPQLDKCMSCLLEVA 1200
WD40-rpts
Query 1201 LSGNEEQKPFDYKLRPEVAVYVDLALGCSKEPARSLWISMQDYAVSKDWDSATLSNESLLDTVSRFVLAALLKHTNLLSQ 1280
WD40-rpts
Query 1281 ACGESRQPGKSLSEVYRCVYKVRSRLLACKNLELIQTRSSSRDRWITDNQDSADVDPQEHSFTRTIDEEAEMEELAERDR 1360
WD40-rpts
Query 1361 EDGHPEPEDEEEEREHEVMTAGKIFQCFLSAREVARSRDRDRMNSGAGSGVRADDPPPQSQQERRVSTDLPEGQDVYTAA 1440
WD40-rpts
Query 1441 CNSVIHRCALLILGVSPVIDELQKRREEGQLQQPSVSASEGTGLMTRSESLTAESRLVHASPSYRLIKSRSESDLSQPES 1520
WD40-rpts
Query 1521 DEEGYALSGRRNVDFDLASSHRKRGPMHSQLESLSDSWTRLKHTRDWFYNSSYSFESDFDLTKSLGVHTLIENVVSFVSG 1600
WD40-rpts
Query 1601 DVGNAPGFKEPEESMSTSPQASIIAMEQQQLRAELRLEALHQILTLLSGMEEKGNVLLTGSRSSSGFQSSTLLTSVRLQF 1680
WD40-rpts
Query 1681 LAGCFGLGTVGHTGTKGESGRLHHYQDGIRAAKRNIQVEIQVAVHKIYQQLSATLERALQANKHHIEAQQRLLLVTVFAL 1760
WD40-rpts
Query 1761 SVHYQPVDVSLAISTGLLNVLSQLCGTDTMLGQPLQLLPKTGVSQLSTALKVASTRLLQILAITTGTYADKLSPKVVQSL 1840
WD40-rpts
Query 1841 LDLLCSQLKNLLSQTGVLFMASFGEGEEGEEEEKKVDSSGEAEKRDFRAALRKQHAAELHLGDFLVFLRRVVSSKAIQSK 1920
WD40-rpts (_________________________________________________________________
Query 1921 MASPKWTEVLLNIASQKCSSGIPLVGNLRTRLLALHVLEAVLPACESGVEDDQMAQVVERLFSLLSDCMWETPIAQAKHA 2000
WD40-rpts _______________WD 1_____________________________________________________________
Query 2001 IQIKEKEQEIKLQKQGELEEEDENLPIQEVSFDPEKAQCCIVENGQILTHGSGGKGYGLASTGVTSGCYQWKFYIVKENR 2080
WD40-rpts __________________)
Query 2081 GNEGTCVGVSRWPVHDFNHRTTSDMWLYRAYSGNLYHNGEQTLTLSSFTQGDFITCVLDMEARTISFGKNGEEPKLAFED 2160
WD40-rpts
Query 2161 VDAAELYPCVMFYSSNPGEKVKICDMQMRGTPRDLLPGDPICSPVAAVLAEATIQLIRILHRTDRWTYCINKKMMERLHK 2240
WD40-rpts
Query 2241 IKICIKESGQKLKKSRSVQSREENEMREEKENKEEEKGKHNRHGLADLSEPQLRTLCIEVWPVLAVIGGVDAGLRVGGRC 2320
WD40-rpts
Query 2321 VHKQTGRHATLLGVVKEGSTSAKVQWDEAEITISFPTFWSPSDTPLYNLEPCEPLLFDVARFRGLTASVLLDLTYLTGIH 2400
WD40-rpts
Query 2401 EDVGKQSIKRHEKKHRHESEEKGDIEQKPESESILDVRTGLMSDDVKSQGTTSSKSENEIASFSLEPTLPGVESQHQITE 2480
WD40-rpts
Query 2481 GKRKNHEHISKTHDIAQSEIRAVQLSYLYLGAMKSLSALLGCSKYAELLLIPKVLAENGHNSDCASSPVVHEDVEMRAAL 2560
WD40-rpts
Query 2561 QFLMRHMVKRAVMRSPIKRALGLADLERAQAMIYKLVVHGLLEDQFGGKIKQEIDQQAEESDQAQQAQTPVTTSPSASST 2640
WD40-rpts
Query 2641 TSFMSSSLEDTTTATTPVTDTETVPASESPGVMPLSLLRQMFSSYPTTTVLPTRRAQTPPISSLPASPSDEVGRRQSLTS 2720
WD40-rpts
Query 2721 PDSQSTRPANRTALSDPSSRLSTSPPPPAIAVPLLEMGFSLRQIAKAMEATGARGEADAQSITVLAMWMIEHPGHEDEEE 2800
WD40-rpts
Query 2801 PQPSSTADSRHGATVLGSGGKSNDPCYLQSPGDIPSADAAEMEEGFSESPDNLDHTENAASGSGPPTRGRSTVTRRHKFD 2880
WD40-rpts
Query 2881 LAARTLLARAAGLYRSVQAHRNQSRREGISLQQDPGALYDFNLDEELEIDLDDEAMEAMFGQDLTSDNDILGMWIPEVLD 2960
WD40-rpts
Query 2961 WPTWHVCESEDREEVVVCELCECNVVSFNQHMKRNHPGCGRSANRQGYRSNGSYVDGWFGGECGSGNPYYLLCGSCREKY 3040
WD40-rpts
Query 3041 LALKTKTKTTNSERYKGQAPDLIGKQDSVYEEDWDMLDVDEDEKLTGEEEFELLAGPLGLNDRRIVPEPVQFPDSDPLGA 3120
WD40-rpts
Query 3121 SVAMVTATNSMEETLMQIGCHGSVEKSSSGRVTLGEQAAALANPHDRVVALRRVTAAAQVLLARTMVMRALSLLSVSGSS 3200
WD40-rpts
Query 3201 CSLAAGLESLGLTDIRTLVRLMCLAAAGRAGLSTSPSAIASTSERSRGGHSKASKPISCLAYLSTAVGCLASNTPSAAKL 3280
WD40-rpts
Query 3281 LVQLCTQNLISAATGVNLTTVDDPIQRKFLPSFLRGIAEENKLVTSPNFVVTQALVALLADKGAKLRPNYDKTEIEKKGP 3360
WD40-rpts
Query 3361 LELANALAACCLSSRLSSQHRQWAAQQLVRTLAAHDRDNQTAPQTLADMGGDLRKCSFIKLEAHQNRVMTCVWCNKKGLL 3440
WD40-rpts (____________________WD 2_______
Query 3441 ATSGNDGTIRVWNVTKKQYSLQQTCVFNRLEGDAEESLGSPSDPSFSPVSWSISGKYLAGALEKMVNIWQVNGGKGLVDI 3520
WD40-rpts ____________)
Query 3521 QPHWVSALAWPEEGPATTWSGESPELLLVGRMDGSLGLIEVVDVSTMHRRELEHCYRKDVSVTCIAWFSEDRPFAVGYFD 3600
WD40-rpts (_________________________WD 3__________________
Query 3601 GKLLMGTKEPLEKGGIVLIDAHKETLVSMKWDPTGHILMTCAKEENVKLWGPVSGCWRCLHSLCHPSTVNGIAWCSLPGK 3680
WD40-rpts ______)(___________________WD 4___________________)
Query 3681 GSKMQLLMATGCQNGLVCVWRIPQDTTQTSMTSSEGWWDQESNCQDGYRKSAGAKCVYQLRGHITPVRTVAFSSDGLALV 3760
WD40-rpts (_____________WD 5_
Query 3761 SGGLGGLMNIWSLRDGSVLQTVVIGSGAIQTTVWIPEVGVAACSNRSKDVLVVNCTAEWASANHILATCRTALKQQGVLG 3840
WD40-rpts ___________) (____________________________________
Query 3841 LNMAPCMRAFLERLPMMLQEQYAYEKPHVVCGDQLVHSPYMQCLASLAVGLHLDQLLCNPPVPPHHQNCLPDPTSWNPNE 3920
WD40-rpts _______WD 6__________________________________________)
Query 3921 WAWLECFSTTIKAAEALTNGAQFPESFTVPDLEPVPEDELVLLMDNSKWINGMDEQIMSWATSRPEDWHLGGKCDVYLWG 4000
WD40-rpts
Query 4001 AGRHGQLAEAGRNVMVPATAPSFSQAQQVICGQNCTFVIQANGTVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQ 4080
WD40-rpts
Query 4081 LVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDY 4160
WD40-rpts
Query 4161 GRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIKK 4240
WD40-rpts
Query 4241 VACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQL 4320
WD40-rpts
Query 4321 GLGHTNHVREPTLVTVLQGKNIRQISAGRCHSAAWTAPPVPPRAPGVSVPLQLGLPDAVPPQYGALREVSIHTVRARLRL 4400
WD40-rpts
Query 4401 LYHFSDLMYSSWRLLNLSPNNQNSTSHYNAGTWGIVQGQLRPLLAPRVYTLPMVRSIGKTMVQGKNYGPQITVKRISTRG 4480
WD40-rpts
Query 4481 RKCKPIFVQIARQVVKLNASDLRLPSRAWKVKLVGEGADDAGGVFDDTITEMCQELETGIVDLLIPSPNATAEVGYNRDR 4560
WD40-rpts
Query 4561 FLFNPSACLDEHLMQFKFLGILMGVAIRTKKPLDLHLAPLVWKQLCCVPLTLEDLEEVDLLYVQTLNSILHIEDSGITEE 4640
WD40-rpts
Query 4641 SFHEMIPLDSFVGQSADGKMVPIIPGGNSIPLTFSNRKEYVERAIEYRLHEMDRQVAAVREGMSWIVPVPLLSLLTAKQL 4720
WD40-rpts
Query 4721 EQMVCGMPEICVDVLKKVVRYREVDEQHQLVQWLWRTLEEFSNEERVLFMRFVSGRSRLPANTADISQRFQIMKVDRPYD 4800
WD40-rpts
Query 4801 SLPTSQTCFFQLRLPPYSSQLVMAERLRYAINNCRSIDMDNYMLSRNVDNAEGSDTDY 4858
WD40-rpts
 6 WD40-repeats found in QUERY=ENSMUSP00000096218 (Len=4858): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 41 1855-2019 3.34 252.50 0.02436 35.0% 4.62 WD 2: Seg 61 3409-3453 6.23 371.92 0.00060 32.5% 30.21 WD 3: Seg 69 3553-3607 3.96 278.07 0.01109 17.5% 36.95 WD 4: Seg 73 3608-3651 5.16 327.61 0.00239 17.5% 39.64 WD 5: Seg 79 3742-3772 6.81 396.04 0.00029 35.0% 31.56 WD 6: Seg 85 3804-3894 2.96 236.78 0.03938 15.0% 0.44Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1855-2019 TGV--L----FMA-----SFGEGE--------------------EGEEEEKKVDSSGEAEKRDFRAALRKQHAAELHLGDFLVFLRRVVSSKAIQSKMA-------------------SPKWTEVLLNIASQKCSSGIPLVGNLRTRLLALHVLEAVLPACESGVEDDQMAQVVERLFSLLSDCMW------------ETPIAQAKHAIQIKEKEQEIKLQKQGELE WD 2 3409-3453 MGG--D----LRKCSFIKLEAHQN--------------------RV--------MTC---------------------------------V-------W-------------------CN---------------KKGLLA---------------------TSGND----------------GTI------------RV-------------------------WN WD 3 3553-3607 DGSLGL----IEV-----VDVSTM-------HRRELEHCYRKDVSV--------TCI---------------------------------A-------W-------------------FS---------------EDRPFA---------------------VGYFD----------------GKL------------LM-------------------------GT WD 4 3608-3651 KEP--LEKGGIVL-----IDAHKE--------------------TL--------VSM---------------------------------K-------W-------------------DP---------------TGHILM---------------------TCAKE----------------ENV------------KL-------------------------WG WD 5 3742-3772 --------------------GHIT--------------------PV--------RTV---------------------------------A-------F-------------------SS---------------DGLALV---------------------SGGLG----------------GLM------------NI-------------------------WS WD 6 3804-3894 SNR--S----KDV-----LVVNCTAEWASANHILATCRTALKQQGV--------LGL---------------------------------N-------MAPCMRAFLERLPMMLQEQYAY---------------EKPHVV---------------------CGDQL----------------VHSPYMQCLASLAVGLH-------------------------LD WD40 Template TGE--C----LRT-----LSGHTS--------------------GV--------TSV---------------------------------S-------F-------------------SP---------------DGKRLV---------------------SGSED----------------GTI------------KV-------------------------WD |
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