Input parameters:

  Query = ENSMUSP00000096047 (Len=342)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000096047, Len=342):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRMHNLHGTRPSPSEGSDDDEEDEDEEDEEEQKPQLELAMVPHYGGINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLL 80  
WD40-rpts                                               (______________WD 1______________)     

Query       81 QVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNVHLWTPTEGGSWNVDQRPFVGHTRSV 160 
WD40-rpts                            (________________WD 2_______________)(____________________

Query      161 EDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNVISWSRREPFLLSGGDDGALKVWDLRQFKSGS 240 
WD40-rpts      _WD 3____________________)       (_________________WD 4________________)      (_

Query      241 PVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPESGETETDPGLAALPQQLLFVHQGETDLKELHWHP 320 
WD40-rpts      ________________WD 5_________________)(__________________WD 6_________________) 

Query      321 QCPGVLISTALSGFTVFRTISV 342 
WD40-rpts                            

6 WD40-repeats found in QUERY=ENSMUSP00000096047 (Len=342):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    42-75       4.36  294.90  0.00659       22.5%     40.99
  WD 2:  Seg  8   103-139      6.47  382.05  0.00044       20.0%     48.87
  WD 3:  Seg 12   140-186      7.55  426.45  0.00011       35.0%     47.57
  WD 4:  Seg 15   194-232      9.21  494.96  1.3e-05       37.5%     52.43
  WD 5:  Seg 19   239-278      7.93  442.34  6.8e-05       32.5%     53.48
  WD 6:  Seg 23   279-319      4.68  307.93  0.00440       20.0%     11.73

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   42-75     --------------VPHYGGINRVRVSW-LGE-EPVAG-VWSEKGQVEVFA
   WD 2  103-139    ----------IFSFAGHMGEGFALDWSP-RVPGR--LL-TGDCQKNVHLWT
   WD 3  140-186    PTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDT-V--FA-SCSADASIRIWD
   WD 4  194-232    -AC------MLTTATAHDGDVNVISWSR-REP-F--LL-SGGDDGALKVWD
   WD 5  239-278    -GS------PVATFKQHMAPVTSVEWHPQDSG-V--FA-ASGADNQITQWD
   WD 6  279-319    LAV------ERDPESGETETDPGLAALP-QQL-L--FVHQGETDLKELHWH

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSP-DGK-R--LV-SGSEDGTIKVWD