Input parameters:

  Query = ENSMUSP00000095963 (Len=283)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000095963, Len=283):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAK 80  
WD40-rpts                                                                                      

Query       81 FRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEM 160 
WD40-rpts         (_______________________WD 1______________________)   (_________________WD 2_

Query      161 HIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLH 240 
WD40-rpts      _______________)       (__________________WD 3__________________)               

Query      241 IERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS 283 
WD40-rpts                                                 

3 WD40-repeats found in QUERY=ENSMUSP00000095963 (Len=283):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    84-134      3.86  274.07  0.01254       20.0%     26.53
  WD 2:  Seg  5   138-176      7.30  416.02  0.00015       17.5%     49.42
  WD 3:  Seg  9   184-225      2.88  233.65  0.04331       12.5%     18.01

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   84-134    KAKDFTYKEIPLMCGLFGYACYISGCGLTR--KGQDKSVVCMVNSKNTISTWD
   WD 2  138-176    -SV-----------ITWKSPEQPASIKLLT--TLPEMHIAVTVDIQSTIKLWD
   WD 3  184-225    ATN-----------NLKSPCKSLKAVFTKDGPIVLDPLHVIVICNTGSMDVYA

   WD40 Template    TGE-----------CLRTLSGHTSGVTSVS--FSPDGKRLVSGSEDGTIKVWD