Input parameters:

  Query = ENSMUSP00000095962 (Len=469)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000095962, Len=469):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METHLPSLPSLPMMKILSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLYCDTVILQLHDKETWKQFFVNRTYQE 80  
WD40-rpts                                                                                      

Query       81 HTKTRAKPEDFTYKEICAETGIWAYACYISGRGLTRNGQGTSVVCMLTSMTKISTWDIHEGVMTWVSPVQPTTIKLLNTL 160 
WD40-rpts                     (__________________WD 1__________________)   (_________________WD

Query      161 PEMHIAVTVDIHSTIKLWDCNSSDALATNNLFFPCQTLKSVFTKDAAIVLVSDTLGNLYIFRIPDLHLISTINVFPYGIN 240 
WD40-rpts       2________________)   (_________________WD 3_________________)   (______________

Query      241 ELYCSPQKKWVFLSRKHPHILPKVFYMNSLLRRSEFSAPVSTVLNFSLCDKAFWTPRKEDRITLMSISAPYKVTKFVTFD 320 
WD40-rpts      ___WD 4________________)   (_________________WD 5________________)              

Query      321 MKLEEIGNQIIVTGYLIASFSLTDYEGRLECFGVSDKDVIVCSTGSSLLLFSIYGVCLQTFDYCSEEILRLWVDPFHVIV 400 
WD40-rpts                   (_________________WD 6________________)  (_________________WD 7____

Query      401 TFIDGSLDVYAWEERCQQLSKCYRLQNRRRLPRQSCFEKTLCDEVSIIRMVRNGRNPCYLMTYTLNIHS 469 
WD40-rpts      ____________)                                                        

7 WD40-repeats found in QUERY=ENSMUSP00000095962 (Len=469):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    96-137      2.86  232.68  0.04461       10.0%     22.99
  WD 2:  Seg  7   141-179      8.08  448.55  5.6e-05       20.0%     56.44
  WD 3:  Seg 11   183-222      6.29  374.29  0.00056       12.5%     51.93
  WD 4:  Seg 15   226-264      7.57  427.39  0.00011       15.0%     52.51
  WD 5:  Seg 19   268-306      5.08  324.59  0.00263       17.5%     34.09
  WD 6:  Seg 25   334-372      5.94  360.06  0.00087       12.5%     44.01
  WD 7:  Seg 29   375-413      6.50  382.96  0.00043       15.0%     39.31

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   96-137    ICAETGIWAYAC-YISGRGLTRNGQGTSVVCMLTSMTKISTWD
   WD 2  141-179    GVMTWVSPVQPT-TIKLLNTLPEM---HIAVTVDIHSTIKLWD
   WD 3  183-222    SDALATNNLFFPCQTLKSVFTKDA---AIVLVSDTLGNLYIFR
   WD 4  226-264    LHLISTINVFPY-GINELYCSPQK---KWVFLSRKHPHILPKV
   WD 5  268-306    NSLLRRSEFSAP-VSTVLNFSLCD---KAFWTPRKEDRITLMS
   WD 6  334-372    GYLIASFSLTDY-EGRLECFGVSD---KDVIVCSTGSSLLLFS
   WD 7  375-413    GVCLQTFDYCSE-EILRLWVDPFH---VIVTFIDGSLDVYAWE

   WD40 Template    GECLRTLSGHTS-GVTSVSFSPDG---KRLVSGSEDGTIKVWD