Input parameters:

  Query = ENSMUSP00000095953 (Len=1276)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000095953, Len=1276):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTLTERLREKISQAFYNHGLLCASYPIPIILFTGLCILACCYPLLKLPLPGTGPVEFSTPVKGYSPPPADSDHKQGEPSE 80  
WD40-rpts                                                                                      

Query       81 QPEWYVGAPVAYIQQIFVKSSVSPWHRNLLAVDVFRSPLSRAFQLVEEIRNHVLRDSSGTKSLEEVCLQVTDLLPGLRKL 160 
WD40-rpts                                                                                      

Query      161 RSLLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSGVSLYTRKRMVSYTITLVF 240 
WD40-rpts                                                                                      

Query      241 QRYHAKFLSSLRARLMLLHPSPNCSLRAENLVHVHFKEEIGIAELIPLVTTYIILFAYIYFSTRKIDMVKSKWGLALAAV 320 
WD40-rpts                                                                                      

Query      321 VTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNAATEL 400 
WD40-rpts                                                                                      

Query      401 GIILIGYFTLVPAIQEFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPESCLPSAKPVGRPARYERQQAV 480 
WD40-rpts                                                                                      

Query      481 RPSTPHTITLQPSSFRNLRLPKRLRVIYFLARTRLAQRLIMAGTVVWIGILVYTDPAGLRTYLAAQVTEQSPLGEGSLGP 560 
WD40-rpts                                                                                      

Query      561 MPVPSGVLPASHPDPAFSIFPPDAPKLPENQTLPGELPEHAGPAEGVHDSRAPEVTWGPEDEELWRKLSFRHWPTLFNYY 640 
WD40-rpts                                                                                      

Query      641 NITLAKRYISLLPVIPVTLHLNPREALEGRHPQDGRSAWAPQEPLPAGLWESGPKGPGGTQTHGDITLYKVAALGLAAGI 720 
WD40-rpts                                                                                      

Query      721 VLVLLLLCLYRVLCPRNYGQPGGGPGRRRRGELPCDDYGYAPPETEIVPLVLRGHLMDIECLASDGMLLVSCCLAGQVCV 800 
WD40-rpts                                                            (___________WD 1__________

Query      801 WDAQTGDCLTRIPRPGPRRDSCGGGAFETQENWERLSDGGKASPEEPGDSPPLRRRPRGPPPPSLFGDQPDLTCLIDTNF 880 
WD40-rpts      _)          (___________________WD 2__________________)                         

Query      881 SVQLPPEPTQPEPRHRVGCGRSRDSGYDFSRLVQRVYQEEGLAAMRMPALRPPSPGPPLPQASQEEGTAPEKGSPPLAWT 960 
WD40-rpts                                                                                     (

Query      961 PSTAGSIWSLELQGNLIVVGRSSGRLEVWDAIEGVLCCSNEEISSGITALVFLDRRIVAARLNGSLDFFSLETHTSLSPL 1040
WD40-rpts      _____________WD 3____________)   (________________WD 4_______________)          

Query     1041 QFRGTPGRGSSPSSSVYSSSNTVTCHRTHTVPCAHQKPITALRAAAGRLVTGSQDHTLRVFRLDDSCCLFTLKGHSGAIT 1120
WD40-rpts                        (___________________WD 5___________________)   (______________

Query     1121 AVYIDQTMVLASGGQDGAICLWDVLTGSRVSQTFAHRGDVTSLTCTASCVISSGLDDFISIWDRSTGIKLYSIQQDLGCG 1200
WD40-rpts      __WD 6________________)   (________________WD 7_______________)   (_____________

Query     1201 ASLGVISDNLLVTGGQGCVSFWDLNYGDLLQTVYLGKNSEAQPARQILVLDNAAIVCNFGSELSLVYVPSVLEKLD 1276
WD40-rpts      ___WD 8_______________)                                                     

8 WD40-repeats found in QUERY=ENSMUSP00000095953 (Len=1276):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   775-802      3.87  274.57  0.01235       25.0%     36.45
  WD 2:  Seg 17   813-855      3.68  266.76  0.01571       12.5%     18.11
  WD 3:  Seg 23   960-990      4.47  299.45  0.00572       20.0%     44.99
  WD 4:  Seg 26   994-1030     5.53  342.94  0.00149       20.0%     52.21
  WD 5:  Seg 32  1059-1102     5.69  349.69  0.00121       25.0%     42.55
  WD 6:  Seg 36  1106-1143     7.95  443.08  6.6e-05       40.0%     55.00
  WD 7:  Seg 40  1147-1183     6.53  384.41  0.00041       25.0%     50.14
  WD 8:  Seg 44  1187-1223     5.00  321.38  0.00290       20.0%     46.98

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  775-802    -------------------HLMDIECL--ASDGMLLVSCCLAGQVCVWD
   WD 2  813-855    PRPGPRR------DSCGGGAFETQENWERLSDGGKASPEEPGDSPPLRR
   WD 3  960-990    -------------TP---STAGSIWSLEL--QGNLIVVGRSSGRLEVWD
   WD 4  994-1030   -GVLCCS------NE---EISSGITALVFL--DRRIVAARLNGSLDFFS
   WD 5 1059-1102   SSNTVTCHRTHTVPC---AHQKPITAL--RAAAGRLVTGSQDHTLRVFR
   WD 6 1106-1143   -SCCLFT------LK---GHSGAITAVYI-DQTMVLASGGQDGAICLWD
   WD 7 1147-1183   -GSRVSQ------TF---AHRGDVTSLTCT--ASCVISSGLDDFISIWD
   WD 8 1187-1223   -GIKLYS------IQ---QDLGCGASLGVISDNLLVTGG--QGCVSFWD

   WD40 Template    TGECLRT------LS---GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD