Input parameters:

  Query = ENSMUSP00000095291 (Len=307)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000095291, Len=307):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNFIKTYPAHQNRVSAIIFSLAAEWVISTGHDKCVSWMCTRSGNMLGRHFFSSWASCLQYDLDTQHAFVGDYSGQITLLK 80  
WD40-rpts      (_________________WD 1________________)  (_________________WD 2________________)

Query       81 LEQNTCSVITTLKGHEGSIACLWWDPIQRLLFSGASDNSVIMWDIGGRKGRTLLLQGHHDRVQSLCYLQLTRQLVSCSAD 160 
WD40-rpts           (_________________WD 3________________)(___________________WD 4____________

Query      161 GGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRV 240 
WD40-rpts      ______)   (________________WD 5________________)  (_________________WD 6________

Query      241 CDSCYDSIKDEDRTSLATFHEGKHNISHMSMDIARGLMVTCGTDRVVKIWDMTPVVGCSLATGFSPH 307 
WD40-rpts      ________)   (_________________WD 7________________)                

7 WD40-repeats found in QUERY=ENSMUSP00000095291 (Len=307):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       8.74  475.54  2.4e-05       17.5%     55.19
  WD 2:  Seg  5    42-80       7.87  439.92  7.3e-05       12.5%     54.61
  WD 3:  Seg  9    86-124      9.55  509.32  8.5e-06       27.5%     55.56
  WD 4:  Seg 13   125-167      9.23  495.78  1.3e-05       37.5%     58.04
  WD 5:  Seg 17   171-208      4.74  310.61  0.00405        5.0%     41.78
  WD 6:  Seg 21   211-249      5.93  359.48  0.00089       17.5%     22.90
  WD 7:  Seg 24   253-291      8.55  467.80  3.1e-05       20.0%     56.30

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -M---NFIKTYPAHQNRVSAIIFSLAAEWVISTGHDKCVSWMC
   WD 2   42-80     -S---GNMLGRHFFSSWASCLQYDLDTQHAFVGDYSGQITLLK
   WD 3   86-124    -C---SVITTLKGHEGSIACLWWDPIQRLLFSGASDNSVIMWD
   WD 4  125-167    IGGRKGRTLLLQGHHDRVQSLCYLQLTRQLVSCSADGGIAVWN
   WD 5  171-208    -S---REEAPQWLESDSC-QKCEQPFFWNIKQMWDTKTLGLRQ
   WD 6  211-249    CR---KCGQAVCGKCSSKRS-SYPVMGFEFQVRVCDSCYDSIK
   WD 7  253-291    -R---TSLATFHEGKHNISHMSMDIARGLMVTCGTDRVVKIWD

   WD40 Template    TG---ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD