Input parameters:

  Query = ENSMUSP00000095160 (Len=1457)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000095160, Len=1457):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGNSLVLPIVLWGRKAPTHCISSILLTDDGGTIVTGCHDGQICLWDVSVELEVNPRALLFGHTASITCLSKACASGDKR 80  
WD40-rpts              (_________________WD 1________________)      (__________________WD 2____

Query       81 YTVSASANGEMCLWDVNDGRCIEFTKLACTHTGIQFYQFSVGNQQEGRLLCHGHYPEILVVDATSLEVLYSLVSKISPDW 160 
WD40-rpts      ______________)           (_______________WD 3_______________)   (______________

Query      161 ISSMSIIRSQRTQEDTVVALSVTGILKVWIVTSEMSGMQDTEPIFEEESKPIYCQNCQSISFCAFTQRSLLVVCSKYWRV 240 
WD40-rpts      ______WD 4___________________)                                            (_____

Query      241 FDAGDYSLLCSGPSENGQTWTGGDFVSADKVIIWTENGQSYIYKLPASCLPASDSFRSDVGKAVENLIPPVQHSLLDQKD 320 
WD40-rpts      ____________WD 5________________)                                           (___

Query      321 KELVICPPVTRFFYGCKEYLHKLLIQGDSSGRLNIWNIADIAEKQEADEGLKMTTCISLQEAFDKLKPCPAGIIDQLSVI 400 
WD40-rpts      _______________WD 6_________________)                                           

Query      401 PNSNEPLKVTASVYIPAHGRLVCGREDGSIIIVPATQTAIVQLLQGEHMLRRGWPPHRTLRGHRNKVTCLLYPHQVSARY 480 
WD40-rpts       (______________WD 7_____________)                   (____________________WD 8__

Query      481 DQRYLISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQLLVPPENCSARVQHCICSVASDHSVGLLSLREKKCIMLASRHL 560 
WD40-rpts      _________________)   (____________________WD 9___________________)   (__________

Query      561 FPIQVIKWRPSDDYLVVGCTDGSVYVWQMDTGALDRCAMGITAVEILNACDEAVPAAVDSLSHPAVNLKQAMTRRSLAAL 640 
WD40-rpts      _______WD10________________)   (_________________WD11________________)(_________

Query      641 KNMAHHKLQTLATNLLASEASDKGNLPKYSHNSLMVQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENL 720 
WD40-rpts      ________WD12________________)                           (_________________WD13__

Query      721 QKASGSSDKGGSFLTGKRAAVLFQQVKETIKENIKEHLLDEEEDEEEARRQSREDSDPEYRASKSKPLTLLEYNLTMDTA 800 
WD40-rpts      ______________)                                 (_______________________________

Query      801 KLFMSCLHAWGLNEVLDEVCLDRLGMLKPHCTVSFGLLSRGGHMSLMLPGYNQAAGKLLHAKAEVGRKLPAAEGVGKGTY 880 
WD40-rpts      ________WD14_______________________________________)                            

Query      881 TVSRAVTTQHLLSIISLANTLMSMTNATFIGDHMKKGPTRPPRPGTPDLSKARDSPPPSSNIVQGQIKQGWSQLAAMHCV 960 
WD40-rpts                           (__________________WD15_________________)                  

Query      961 MLPDLLGLERFRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIEQAGRKETIDTWAPYLPQYMDHVISPGVTAEAMQT 1040
WD40-rpts                                                                                      

Query     1041 MAAAPDASGPEAKVQEEEHDLVDDDITAGCLSSVPQMKKISTSYEERRKQATAIVLLGVIGAEFGAEIEPPKLLTRPRSS 1120
WD40-rpts                                                                                      

Query     1121 SQIPEGFGLTSGGSNYSLARHTCKALTYLLLQPPSPKLPPHSTIRRTATDLIGRGFTVWEPYMDVSAVLMGLLELCADAE 1200
WD40-rpts                                                                                      

Query     1201 KQLANITMGLPLSPAADSARSARHALSLIATARPPAFITTIAKEVHRHTALAANTQSQQSIHTTTLARAKGEILRVIEIL 1280
WD40-rpts                                                                                      

Query     1281 IEKMPTDVVDLLVEVMDIIMYCLEGSLVKKKGLQECFPAICRFYMVSYYERSHRIAVGARHGSVALYDIRTGKCQTIHGH 1360
WD40-rpts                                   (_________________WD16________________)  (_________

Query     1361 KGPITAVSFAPDGRYLATYSNTDSHISFWQMNTSLLGSIGMLNSAPQLRCIKTYQVPPVQPASPGSHNALKLARLIWTSN 1440
WD40-rpts      ________WD17_________________)(___________________WD18___________________)      

Query     1441 RNVILMAHDGKEHRFMV 1457
WD40-rpts                       

18 WD40-repeats found in QUERY=ENSMUSP00000095160 (Len=1457):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-47       8.03  446.20  6.0e-05       30.0%     52.47
  WD 2:  Seg  5    54-95       7.12  408.57  0.00019       35.0%     45.05
  WD 3:  Seg  9   107-142      5.17  328.26  0.00234       25.0%     43.63
  WD 4:  Seg 12   146-190      5.53  342.89  0.00149       30.0%     53.72
  WD 5:  Seg 19   235-273      4.63  305.81  0.00470       15.0%     45.62
  WD 6:  Seg 26   317-357      4.93  318.43  0.00318       12.5%     36.59
  WD 7:  Seg 32   402-434      6.55  385.27  0.00040       30.0%     46.95
  WD 8:  Seg 36   454-498      7.12  408.71  0.00019       35.0%     46.37
  WD 9:  Seg 40   502-546      6.50  382.97  0.00043       17.5%     54.26
  WD10:  Seg 44   550-588      9.03  487.68  1.7e-05       27.5%     55.64
  WD11:  Seg 48   592-630      7.05  406.04  0.00021       12.5%     45.70
  WD12:  Seg 52   631-669      5.54  343.61  0.00146       12.5%     22.91
  WD13:  Seg 56   697-735      6.22  371.57  0.00061       20.0%     47.03
  WD14:  Seg 61   769-852      3.05  240.71  0.03493       10.0%     -3.34
  WD15:  Seg 65   902-942      3.86  273.99  0.01257       12.5%     -18.88
  WD16:  Seg 67  1310-1348     7.82  437.87  7.8e-05       17.5%     48.20
  WD17:  Seg 71  1351-1390     8.24  455.11  4.6e-05       37.5%     53.73
  WD18:  Seg 75  1391-1434     6.03  363.59  0.00078        7.5%     34.93

Multiple sequence alignment of 18 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-47     -PI----------------------------------VLWGRKA-P----------THC--ISSIL---LT------DDG------GT----IVTGCH-DGQICLWD
   WD 2   54-95     -VN----------------------------------PRALLFG-H----------TAS--ITCLSKACAS------GDK------RY----TVSASA-NGEMCLWD
   WD 3  107-142    -------------------------------------LACTHTG-I----------QFY--QFSVG---NQ------QEG------RL----LCHGHY-P-EILVVD
   WD 4  146-190    -LE----------------------------------VLYSLVS-K----------ISPDWISSMS---II------RSQ------RTQEDTVVALSV-TGILKVWI
   WD 5  235-273    -SK----------------------------------YWRVFDA-G----------DYS--LLCSG---PS------ENG------QT----WTGGDF-VSADKVII
   WD 6  317-357    DQK----------------------------------DKELVICPP----------VTR--FFYGC---KE------YLH------KL----LIQGDS-SGRLNIWN
   WD 7  402-434    N-----------------------------------------SN-E----------PLK--VTASV---YI------PAH------GR----LVCGRE-DGSIIIVP
   WD 8  454-498    -WP----------------------------------PHRTLRG-H----------RNK--VTCLL---YPHQVSARYDQ------RY----LISGGV-DFSVIIWD
   WD 9  502-546    -GE----------------------------------MKHIFCV-H----------GGE--ITQLL---VP------PENCSARVQHC----ICSVAS-DHSVGLLS
   WD10  550-588    -KK----------------------------------CIMLASR-H----------LFP--IQVIK---WR------PSD------DY----LVVGCT-DGSVYVWQ
   WD11  592-630    -GA----------------------------------LDRCAMG-I----------TAV--EILNA---CD------EAV------PA----AVDSLS-HPAVNLKQ
   WD12  631-669    -AM----------------------------------TRRSLAA-L----------KNM--AHHKL---QT------LAT------NL----LASEAS-DKGNLPKY
   WD13  697-735    -AL----------------------------------IIQLLTE-E----------ASR--PNTAL---IS------PEN------LQ----KASGSS-DKGGSFLT
   WD14  769-852    RRQSREDSDPEYRASKSKPLTLLEYNLTMDTAKLFMSCLHAWGL-NEVLDEVCLDRLGM--LKPHC---TV------SFG------LL----SRGGHM-SLMLPGYN
   WD15  902-942    MSM----------------------------------TNATFIGDH----------MKK--GPTRP---PR------PGT------PD----LSKARD-SPPPSSNI
   WD16 1310-1348   -KK----------------------------------GLQECFP-A----------ICR--FYMVS---YY------ERS------HR----IAVGAR-HGSVALYD
   WD17 1351-1390   -TG----------------------------------KCQTIHG-H----------KGP--ITAVS---FA------PDG------RY----LATYSNTDSHISFWQ
   WD18 1391-1434   MNT------------------------------SLLGSIGMLNS-A----------PQL--RCIKT---YQ------VPP------VQ----PASPGS-HNALKLAR

   WD40 Template    TGE----------------------------------CLRTLSG-H----------TSG--VTSVS---FS------PDG------KR----LVSGSE-DGTIKVWD