Input parameters:

  Query = ENSMUSP00000093960 (Len=897)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000093960, Len=897):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGAAGPGEGPAHETLQTLSQRLRVQEEEMELVKAALAEALRLLRLHGSTTTLQGSGISAPTRNSSITVPPGLPPTCSPS 80  
WD40-rpts                                                                                      

Query       81 LVTRGTQTEEELEIVPSSGPPGLSNGPPALQGGSEEPSGTQSEGGCSSSSGAGSPGPPGILRPVQPLQRSDTPRRNSSSS 160 
WD40-rpts                                                                                      

Query      161 SSPSERPRQKLSRKAASSANLLLRSGSTESRGNKDPLSSPGGPGSRRSNYNLEGISVKMFLRGRPITMYIPSGIRSLEEL 240 
WD40-rpts                            (_________________WD 1________________)        (__________

Query      241 PSGPPPETLSLDWVYGYRGRDSRSNLFVLRSGEVVYFIACVVVLYRPGGGPGGPGGGGQRHYRGHTDCVRCLAVHPDGVR 320 
WD40-rpts      _______WD 2________________)                           (_________________WD 3___

Query      321 VASGQTAGVDKDGKPLQPVVHIWDSETLLKLQEIGLGAFERGVGALAFSAADQGAFLCVVDDSNEHMLSVWDCSRGVKLA 400 
WD40-rpts      _____________)          (_____________________WD 4_____________________)   (____

Query      401 EIKSTNDSVLAVGFSPRDSSCIVTSGKSHVHFWNWSGGTGAPGNGLLARKQGVFGKYKKPKFIPCFVFLPDGDILTGDSE 480 
WD40-rpts      _____________WD 5________________)(________________________WD 6_________________

Query      481 GNILTWGRSVSDSKTPGRGGAKETYTIVAQAHAHEGSIFALCLRRDGTVLSGGGRDRRLVQWGPGLVALQEAEIPEHFGA 560 
WD40-rpts      ______)                 (_________________WD 7________________)(________________

Query      561 VRAIAEGLGSELLVGTTKNALLRGDLAQGFSPVIQGHTDELWGLCTHPSQNRFLTCGHDRQLCLWDGEGHALAWSMDLKE 640 
WD40-rpts      __WD 8__________________)(__________________WD 9_________________)  (___________

Query      641 TGLCADFHPSGAVVVVGLNTGRWLVLDTETREIVSDVTDGNEQLSVVRYSPDGLYLAIGSHDNMIYIYSVSSCGTKSSRF 720 
WD40-rpts      ______WD10________________)   (_________________WD11________________)(__________

Query      721 GRCMGHSSFITHLDWSKDGNFIMSNSGDYEILYWDVAGGCKLLRNRYESRDREWATYTCVLGFHVYGVWPDGSDGTDINS 800 
WD40-rpts      __________WD12____________________)                          (__________________

Query      801 LCRSHNERVVAVADDFCKVHLFQYPCARAKAPSRMYSGHGSHVTSVRFTHDDSYLVSLGGKDASIFQWRVLGAGSSGPAP 880 
WD40-rpts      WD13__________________)      (_________________WD14_________________)           

Query      881 ATPSRTPSLSPASSLDV 897 
WD40-rpts                       

14 WD40-repeats found in QUERY=ENSMUSP00000093960 (Len=897):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   183-221      3.38  254.26  0.02308       17.5%      2.33
  WD 2:  Seg  4   230-268      4.23  289.40  0.00781       20.0%     12.34
  WD 3:  Seg  8   296-334      6.88  398.89  0.00026       35.0%     33.63
  WD 4:  Seg 12   345-392      6.44  380.55  0.00046       27.5%     42.39
  WD 5:  Seg 16   396-434      8.13  450.43  5.3e-05       22.5%     57.75
  WD 6:  Seg 20   435-487      5.15  327.36  0.00241       20.0%     46.11
  WD 7:  Seg 23   505-543      7.05  406.06  0.00021       17.5%     52.26
  WD 8:  Seg 27   544-585      4.99  320.87  0.00295       15.0%     52.58
  WD 9:  Seg 31   586-626      7.95  442.94  6.7e-05       20.0%     54.06
  WD10:  Seg 35   629-667      6.98  403.16  0.00023       25.0%     56.91
  WD11:  Seg 39   671-709      8.67  472.75  2.6e-05       27.5%     58.62
  WD12:  Seg 43   710-755      8.45  463.68  3.5e-05       35.0%     52.16
  WD13:  Seg 49   782-823      5.45  339.75  0.00164        5.0%     54.93
  WD14:  Seg 53   830-869      7.43  421.59  0.00013       45.0%     45.41

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  183-221    -L--------------R-S------GS----TE--SRGNKDPLSSPGGPGSRR----SNY-NLEGISVKMFL
   WD 2  230-268    IP--------------S-G------IR----SL--EELPSGPPPETLSLDWVY----GYR-GR-DSRSNLFV
   WD 3  296-334    -G--------------G-G------QR----HY--RGHTDCVRCLAVHPDGVR----VAS-GQTAGVDKDGK
   WD 4  345-392    SE--------------T-L------LKLQEIGL--GAFERGVGALAFSAADQGAFLCVVD-DSNEHMLSVWD
   WD 5  396-434    -G--------------V-K------LA----EI--KSTNDSVLAVGFSPRDSS----CIV-TSGKSHVHFWN
   WD 6  435-487    WSGGTGAPGNGLLARKQ-G------VF----GK--YKKPKFIPCFVFLPDGD-----ILT-GDSEGNILTWG
   WD 7  505-543    -Y--------------T-I------VA----QA--HAHEGSIFALCLRRDGTV----LSG-GGRDRRLVQWG
   WD 8  544-585    PG-----------LVAL-Q------EA----EI--PEHFGAVRAIAEGLGSEL----LVG-TT-KNALLRGD
   WD 9  586-626    LA--------------QGF------SP----VI--QGHTDELWGLCTHPSQNR----FLT-CGHDRQLCLWD
   WD10  629-667    -G--------------H-A------LA----WS--MDLKETGLCADFHPSGAV----VVV-GLNTGRWLVLD
   WD11  671-709    -R--------------E-I------VS----DV--TDGNEQLSVVRYSPDGLY----LAI-GSHDNMIYIYS
   WD12  710-755    VS--------------S-CGTKSSRFG----RC--MGHSSFITHLDWSKDGNF----IMS-NSGDYEILYWD
   WD13  782-823    GF--------------H-V------YG----VWPDGSDGTDINSLCRSHNERV----VAV-ADDFCKVHLFQ
   WD14  830-869    -K--------------A-P------SR----MY--SGHGSHVTSVRFTHDDSY----LVSLGGKDASIFQWR

   WD40 Template    TG--------------E-C------LR----TL--SGHTSGVTSVSFSPDGKR----LVS-GSEDGTIKVWD