Input parameters:

  Query = ENSMUSP00000093905 (Len=1292)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000093905, Len=1292):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METEPDQEHLDQNPCARTVEEELSKSFNLEASLSKFSCLDLDKELEFRSDLIDDKEFDIPQVDTPPTLESILNETDDEDE 80  
WD40-rpts                                                                                      

Query       81 SFVLEDPTLLNVDTIDSHSYDTSSVASSDSGDRANLKRKKKLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAI 160 
WD40-rpts                                                                                      

Query      161 AVSSLIAVGTSHGLALIFDQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP 240 
WD40-rpts                         (____________________WD 1____________________)(______________

Query      241 PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLHSKPELKDHPITQFSLLAMAS 320 
WD40-rpts      ______WD 2___________________)                                                  

Query      321 LTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVNNSVNPMLAFCRGDMVHFLLVKRDESGAIHVTKQKHLHLYY 400 
WD40-rpts                                                                                      

Query      401 DLINFTWINSRTVVLLDSVEKLHVIDRQTQEELETMEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG 480 
WD40-rpts                                                                                      

Query      481 QIFYLGTKSVYVMMLRSWRERMDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDVSKRKAVVADRMVEILFHYADRALK 560 
WD40-rpts                                                                                      

Query      561 KCPDQGKIQVMEQHFQDTVPVIVDYCLLLQRKDLLFGQMYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVH 640 
WD40-rpts                                                                                      

Query      641 FQDKKLLENVEALIVHMDITSLDIQQVVLMCWENRLYDAMVYVYNRGMNEFISPMEKLFKVIAPPLNAGKTLTDEQVVMG 720 
WD40-rpts                                                                                      

Query      721 NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSVEASSEEEVYPYVRTLLHFDTREFLNVLALTFEDFKND 800 
WD40-rpts                                                                                      

Query      801 KQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLEL 880 
WD40-rpts                                                                                      

Query      881 LQAGGIVQFEESRLIRMAEKAEFYQICEFMYEREHQYDKIIDCYLHDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAM 960 
WD40-rpts                                                                                      

Query      961 NHMEELVSLKPCKAAELVATHFSEQIEVVIGQLQNQLLLFKFLRSLLDPREGVHVNQELLQIPPHITEQFIELLCQFSPD 1040
WD40-rpts                                                                                      

Query     1041 QVIQTLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDAHGAFLLLLERLQSRLQEMTRQDENTKEDILLKGVEDTMVE 1120
WD40-rpts                                                                                      

Query     1121 TIALCQRNSQNLNQQQREALWFPLLEAMMTPQKLSSSAAAPHPHCEALKSLTMQVLNSMAAFIALPSILQRILQDPIYGK 1200
WD40-rpts                                                                                      

Query     1201 GKLGEIQGLILGMLDTFNYEQTLLETTASLLNQDLHWSLCNLRASVSRGLNPKQDYCSICLQQYKRRQEMADEIIVFRFL 1280
WD40-rpts                                                                                      

Query     1281 YWVTGASPIQPK 1292
WD40-rpts                  

2 WD40-repeats found in QUERY=ENSMUSP00000093905 (Len=1292):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   180-225      6.15  368.77  0.00067       30.0%     50.05
  WD 2:  Seg  9   226-270      2.84  232.15  0.04533        7.5%     49.39

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  180-225    QN-----QALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWD
   WD 2  226-270    LASGKLLRSIT------DAHPPGTAILHIKFTDDPTLAICNDSGGSVFELT

   WD40 Template    TG-----ECLR------TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD