Input parameters:

  Query = ENSMUSP00000093638 (Len=1118)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000093638, Len=1118):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPATQKPMRYGHTEGHTEVCFDDSGSYIVTCGSDGDVRMWEDLDDDDPKSVNVGEKAFSCALKNGKLVTAVSNNTVQVYT 80  
WD40-rpts       (_________________WD 1_________________)(_________________WD 2________________)

Query       81 FPEGVPDGILTRFTTNANHVVFNGAGNKIAAGSSDFLVKVVDVMDNSQQQTFRGHDAPVLSLSFDPKDIFLASASCDGTV 160 
WD40-rpts         (_________________WD 3________________)   (_________________WD 4_____________

Query      161 RVWNISDQTCAVSWPVLQKSNDVVNAKSICRLAWQPKAGKLLAVPVEKSVKLYRRETWSNPFDLSDSSISQTLNIVTWSP 240 
WD40-rpts      ___)          (_________________WD 5_________________)       (________________WD

Query      241 CGQYLAAGAINGLIVVWNVETKDCMERVKHEKGYAICGLAWHPTCSRICYTDVEGNLGVLENVCDLSGKVSSNKVSSRVE 320 
WD40-rpts       6_______________)   (_________________WD 7_________________)                   

Query      321 KDYNDLFDGDDTSSAGDFLNDNAVEIPSFSKGIINEDDDNDDIMLAADHDLGDDENSVDVTMLKADLSHKEEGDDDQARS 400 
WD40-rpts                                                                                      

Query      401 IHNLPLIRPQRPFYDGPMPTPRQKPFQSSSTPLHLSHRFMVWNSVGIIRCYNDDQDSAIDVEFHDTSIHHATHLLNAFNY 480 
WD40-rpts                                                                                      

Query      481 TMGTLSHEAILLACESADELASKLHCLHFSSWDSSKEWMVDMPQNEDIEAICLGLGWAAAATTALLLRLFTIGGVQKEVF 560 
WD40-rpts                                                                                      

Query      561 CLPGPVVSMAGHGEQLCIVYHRGTGFDGDQCLGVQLLELGRKKNQVLHGDPLPLTRKSYLTWLGFSAEGTPCYVDSEGCV 640 
WD40-rpts       (________________WD 8_______________)         (________________WD 9____________

Query      641 RMLNRGLGNTWTPVCNIREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQTSTEKGQMEE 720 
WD40-rpts      ___)                                                                            

Query      721 QFWHSVLFHNYLDYLAKNGYDYEESIKNQAVKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVHLAIKYASRSRKLI 800 
WD40-rpts                                                                                      

Query      801 LAQKLSELAAEKAAELAETQSEEEKEEDFREKLNAGYSHTTTEWSRPRVRSQVEDAEDREDTVSEEKPESHNHGQNLFQS 880 
WD40-rpts                                                                                      

Query      881 ANSSDTPALKSGAVFSSSQGWVNPFKVVVSSKEPAVSANSTRSANILDSMNKSSRKSTSLNRMENNEKSPVIKPLTPKPR 960 
WD40-rpts                                                                                      

Query      961 SKQASAASYFQKRTPQADKTEEVKENPKSSSSDAPAVCLQNSENQRPKTGFQMWLEENRSQILSDNPDISDETDIIKEGM 1040
WD40-rpts                                                                                      

Query     1041 IRFRVLSAEERKAWTNKAKGETASDGAEAKKRKRVVSEICETENQEETVKENLDLSKKQKALNLPANQKLSAFAFKQE 1118
WD40-rpts                                                                                    

9 WD40-repeats found in QUERY=ENSMUSP00000093638 (Len=1118):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       7.81  437.21  8.0e-05       30.0%     44.79
  WD 2:  Seg  4    42-80       3.90  275.79  0.01189       15.0%     37.48
  WD 3:  Seg  8    84-122      7.06  406.20  0.00021       30.0%     55.62
  WD 4:  Seg 12   126-164      8.86  480.83  2.1e-05       40.0%     57.84
  WD 5:  Seg 17   175-214      6.18  369.85  0.00064        7.5%     43.75
  WD 6:  Seg 20   222-258      6.39  378.78  0.00049       27.5%     47.24
  WD 7:  Seg 23   262-301      4.74  310.37  0.00408       12.5%     55.11
  WD 8:  Seg 41   562-598      2.83  231.53  0.04618       12.5%     29.58
  WD 9:  Seg 45   608-644      2.81  230.83  0.04719       22.5%     35.42

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     PATQKPMRYGHTE-GHTEVCFDDSGSYIVTCGSDGDVRMWE
   WD 2   42-80     DLDD-DDPKSVNV-GEKAFSCALKNGKLVTAVSNNTVQVYT
   WD 3   84-122    -GVPDGILTRFTT-NANHVVFNGAGNKIAAGSSDFLVKVVD
   WD 4  126-164    -NSQQQTFRGHDA-PVLSLSFDPKDIFLASASCDGTVRVWN
   WD 5  175-214    PVLQKSNDVVNAK-SICRLAWQPKAGKLLAVPVEKSVKLYR
   WD 6  222-258    ---FDLSDSSISQ-TLNIVTWSPCGQYLAAGAINGLIVVWN
   WD 7  262-301    -KDCMERVKHEKGYAICGLAWHPTCSRICYTDVEGNLGVLE
   WD 8  562-598    LPGPVVSMAGHGE-QLCIVYHRGTG---FDGDQCLGVQLLE
   WD 9  608-644    HGDPLPL--TRKS-YLTWLGFSAEGTPCYVDS-EGCVRMLN

   WD40 Template    TGECLRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD