Input parameters:

  Query = ENSMUSP00000093480 (Len=1047)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000093480, Len=1047):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPETPEKVDSAQEKVRGKTPTADDSDDSREKTGIEEKGELTDAYQLQVAEEMAKEIKKKIRKKLKEQLTYFPPDTLLHD 80  
WD40-rpts                                                                                      

Query       81 DKLASEKRKKKKKKVPVPTKPESSPSDVCDSAVEGEQKKEGTPEDSQHMEGICSREQDVDATVPENAKPKPKKTKKKTKA 160 
WD40-rpts                                                                                      

Query      161 VSNDNEDTNGDGVHEITSRDSPVHPKCLLDDDLVMGVYIHRTDRLKSDFMISHPMVKIHVVDEHTGQYVKKDDSERPVSS 240 
WD40-rpts                                                                                      

Query      241 YYEKDNVDYILPIMTQPYDFKKLKSRLPEWEEQVIFNENFPYLLREFEECPKVILFFEILDFLSMDEIKNNSEVQNQECG 320 
WD40-rpts                                                                                      

Query      321 FRKIAWAFLKLLGANGNANINSKLRLQLYYPPTKPRSQLNVVEVFEWWSKCPRNRYPSTLYVTVRGLKVPDCIKPSYRSM 400 
WD40-rpts                                                                                      

Query      401 MALQEERGTPVYCERHRETSSVDTEPGLEDSKEEVKWKRLPGQACRIPNKHLFSLNAGERGCFCLDFSHNGRILAAACAS 480 
WD40-rpts                                                      (__________________WD 1_________

Query      481 RDGYPIILYEIPSGRFMRELCGHLNIIYDLDWSKDDRYLVTSSSDGTARVWKNEINSTSTFRVLPHPSFVYTAKFHPATR 560 
WD40-rpts      _________)   (_________________WD 2________________)    (_________________WD 3__

Query      561 ELVVTGCYDSMIRIWKIDAREDAAILVRQLDVHKSFVNSICFDDEGHHMYSGDCIGVIVVWDTYVKVNDVQHSVRHWTIN 640 
WD40-rpts      _______________)       (_________________WD 4________________)                 (

Query      641 KEIKETEFRGVPISYLEVHPNGKRLLIHTKDSTLRIMDLRILAARKFVGAANYREKIHSTLTPCGTLLFSGSEDGIVYVW 720 
WD40-rpts      _________________WD 5________________)  (__________________WD 6_________________

Query      721 NPETGEQVAMYSDLPFKSTIRDISYHPLENMVAFCAFGQSEPILLYIYDFQVAQQEAEMLKRYSGTLPLPGIHQSEDALC 800 
WD40-rpts      )   (____________________WD 7___________________)           (__________________W

Query      801 TCPKLPQQGSFQIDEFVNTENSSSRKIQLVKQRLETVTEVIRSCAAKVNKNLSMTSPPPGPAKKPRVKQSFVLTTDEIIH 880 
WD40-rpts      D 8_________________)(____________________WD 9___________________)   (__________

Query      881 QFGLPQTAFISIERGPFVRHVDPPPMVVALYDYTASRSDELTIHRGDIIRVYFKDNEDWWYGSVRKGQEGFFPANHVASE 960 
WD40-rpts      _________WD10__________________)  (_________________WD11________________)       

Query      961 TLYRDSPPKVKERSPPLTPKEKTKPEKPLASQKQSLSKGRPLDPRLGPQPVGHSEKGKDQNVEDRGHKVDMETKKSEPVV 1040
WD40-rpts                                                                                      

Query     1041 RKVTLIE 1047
WD40-rpts             

11 WD40-repeats found in QUERY=ENSMUSP00000093480 (Len=1047):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   449-490      6.08  365.67  0.00073       20.0%     51.64
  WD 2:  Seg 19   494-532      9.88  522.74  5.6e-06       37.5%     55.62
  WD 3:  Seg 23   537-576      7.25  414.34  0.00016       27.5%     56.24
  WD 4:  Seg 27   584-622      8.80  478.12  2.2e-05       37.5%     51.04
  WD 5:  Seg 32   640-678      8.78  477.41  2.3e-05       20.0%     51.73
  WD 6:  Seg 36   681-721      7.14  409.61  0.00019       32.5%     53.15
  WD 7:  Seg 40   725-769      5.02  322.20  0.00283       17.5%     55.19
  WD 8:  Seg 44   781-821      6.46  381.50  0.00045       12.5%     35.52
  WD 9:  Seg 47   822-866      5.76  352.62  0.00110       12.5%     12.63
  WD10:  Seg 50   870-912      5.35  335.65  0.00186       12.5%     21.31
  WD11:  Seg 54   915-953      3.37  253.70  0.02348       12.5%     32.32

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  449-490    -N-K-----HLFSLN--AGERGCFCL--DFSHNGRIL-AAACASRDGYP----IILYE
   WD 2  494-532    -G-R-----FMRELC--GHLNIIYDL--DWSKDDRYL-VTSSSDG---T----ARVWK
   WD 3  537-576    -S-T-----STFRVL--PHPSFVYTA--KFHPATRELVVTGCYDS---M----IRIWK
   WD 4  584-622    -A-I-----LVRQLD--VHKSFVNSI--CFDDEGHHM-YSGDCIG---V----IVVWD
   WD 5  640-678    -N-K-----EIKETE--FRGVPISYL--EVHPNGKRL-LIHTKDS---T----LRIMD
   WD 6  681-721    -I-L-----AARKFV--GAANYREKIHSTLTPCGTLL-FSGSEDG---I----VYVWN
   WD 7  725-769    -G-E-----QVAMYSDLPFKSTIRDI--SYHPLENMV-AFCAFGQ---SEPILLYIYD
   WD 8  781-821    KRYS-----GTLPLP--GIHQSEDAL--CTCPKLPQQ-GSFQIDE---F----VNTEN
   WD 9  822-866    SS-SRKIQLVKQRLE--TVTEVIRSC--AAKVNKNLS-MTSPPPG---P----AKKPR
   WD10  870-912    SF-V-----LTTDEI--IHQFGLPQT--AFISIERGP-FVRHVDPPPMV----VALYD
   WD11  915-953    -A-S-----RSDELT--IHRGDIIRV--YFKDNEDWW-YGSVRKG---Q----EGFFP

   WD40 Template    TG-E-----CLRTLS--GHTSGVTSV--SFSPDGKRL-VSGSEDG---T----IKVWD