Input parameters:

  Query = ENSMUSP00000092845 (Len=458)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000092845, Len=458):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLSSGRSGDPRSCEEESDPEPDPDPDTQAEAYVARVLTPPKLGLTPRRSSLQSMFSASLGVPERKAASKVPAVRLPGLL 80  
WD40-rpts                                                                                      

Query       81 SLPPELLLEICAYLDARVVLQVLPCVCQALHDLVRDRVTWRLRAQRRVRAPYPVVEEENFDWPAACIELEQHLARWAEDG 160 
WD40-rpts                      (____________________________WD 1___________________________)   

Query      161 QRTEYFCLADGHFASIDAVLLLQGGALCLSGSRDRNVNLWDLRHLGKDPSRVLVKALGTQGNSTHKGWVWSLAAQDHRVC 240 
WD40-rpts        (_________________WD 2________________)               (_______________WD 3____

Query      241 SGSWDSTVKLWDMAADGQQFGEIKGKAAVLCLSYQPDILVTGTYDKKVTIYDPRAGLALVKSRRLHSSAVLAVLADDRHV 320 
WD40-rpts      ___________)   (________________WD 4_______________)     (_______________WD 5___

Query      321 ISGSEDHSLVVFDRRANSVLQRLQLDSYLLCMSYQEPQLWAGDNQGLLHVFANRDGCFQLVRSFDVGHQSQITGIKHSLG 400 
WD40-rpts      ____________)   (_______________WD 6_______________)(___________________WD 7____

Query      401 TLYTTSTDKTIRVHVPTDPPRTICTRSHHNVLNGICAEGNVVVAASGGLSLEVWRLLA 458 
WD40-rpts      ______________)   (________________WD 8_______________)   

8 WD40-repeats found in QUERY=ENSMUSP00000092845 (Len=458):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    97-157      3.65  265.53  0.01632       10.0%     22.88
  WD 2:  Seg  5   163-201      9.39  502.40  1.1e-05       27.5%     48.84
  WD 3:  Seg 10   217-252      7.37  419.21  0.00014       35.0%     32.68
  WD 4:  Seg 13   256-292      7.03  404.91  0.00022       22.5%     50.33
  WD 5:  Seg 17   298-333      7.28  415.58  0.00016       27.5%     41.54
  WD 6:  Seg 20   337-372      6.33  376.08  0.00053       17.5%     47.48
  WD 7:  Seg 24   373-415      6.53  384.29  0.00041       27.5%     45.27
  WD 8:  Seg 28   419-455      6.47  382.04  0.00044       15.0%     53.53

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   97-157    -RVVLQ-----VLPCVCQALHDLVRDRVTWRLRAQRRVRAPYPVVEEENFDWPAACIELEQHLARWA
   WD 2  163-201    -T---E-----YF-----------CLA-------DGHFASIDAVLLLQGGA-LCLSGSRDRNVNLWD
   WD 3  217-252    LG----------T-----------QGN-------STHKGWVWSL--AAQDH-RVCSGSWDSTVKLWD
   WD 4  256-292    -D---G-----QQ-----------FGE-------IKGKAAVLCLSYQPD---ILVTGTYDKKVTIYD
   WD 5  298-333    -----A-----LV-----------KSR-------RLHSSAV--LAVLADDR-HVISGSEDHSLVVFD
   WD 6  337-372    -N---S-----VL-----------QRL-------QLDSY---LLCMSYQEP-QLWAGDNQGLLHVFA
   WD 7  373-415    NR---DGCFQLVR-----------SFD-------VGHQSQITGIKHSLGT---LYTTSTDKTIRVHV
   WD 8  419-455    -P---P-----RT-----------ICT-------RSHHNVLNGICA--EGN-VVVAASGGLSLEVWR

   WD40 Template    TG---E-----CL-----------RTL-------SGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD